PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00086.1.g02630.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 417aa MW: 44636.3 Da PI: 9.6834

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00086.1.g02630.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	315	337	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C + F ++ L H++ H Zjn_sc00086.1.g02630.1.am.mk 315 FACHYCRRQFYSSQALGGHQNAH 337 78*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.60.120.200	2.4E-10	27	123	IPR013320	Concanavalin A-like lectin/glucanase domain
SuperFamily	SSF56112	5.27E-8	96	153	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:3.30.200.20	5.3E-5	124	156	No hit	No description
SuperFamily	SSF57667	1.28E-5	313	342	No hit	No description
PROSITE profile	PS50157	11.136	315	342	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	317	337	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MLLLPCKIFK EFRCWFVVIV VERHHHLRRE LIAAIVLSSV AGATVLLAAL FACILWRRSR 60 QALDFKGTQS SDTTRITFVP MVNGFDSFKT SKKGAPAMMD YASLEAATGR FSESNVLGAG 120 GFGCVYKANF DGGVAAAVKR LGGGGQECEK EFESAADTEL VAADTELVAA ANHVGEGLRV 180 LTPTTACLLL LLIRNLSGLP DLRVLRERRG WWQWSASTAS RSPLTGSAGT VDQVGKEGRR 240 EKRLIGGGNG HRGQLDAAKV ELDLLGGMVG SVVDFRPAAV RDVADQSSSL PVLLDLVPPD 300 KPPSTATGLD PPQLFACHYC RRQFYSSQAL GGHQNAHKRE RTLARRRGEV APRPLGGLPV 360 HGSPTPFAVH GASLVTAPAL GWVRAVMNSR APAGGYADRR VDGGGEELPK LDLTLKL

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MLLLPCKIFK EFRCWFVVIV VERHHHLRRE LIAAIVLSSV AGATVLLAAL FACILWRRSR  60
QALDFKGTQS SDTTRITFVP MVNGFDSFKT SKKGAPAMMD YASLEAATGR FSESNVLGAG  120
GFGCVYKANF DGGVAAAVKR LGGGGQECEK EFESAADTEL VAADTELVAA ANHVGEGLRV  180
LTPTTACLLL LLIRNLSGLP DLRVLRERRG WWQWSASTAS RSPLTGSAGT VDQVGKEGRR  240
EKRLIGGGNG HRGQLDAAKV ELDLLGGMVG SVVDFRPAAV RDVADQSSSL PVLLDLVPPD  300
KPPSTATGLD PPQLFACHYC RRQFYSSQAL GGHQNAHKRE RTLARRRGEV APRPLGGLPV  360
HGSPTPFAVH GASLVTAPAL GWVRAVMNSR APAGGYADRR VDGGGEELPK LDLTLKL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004087	4e-40	AP004087.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1297_C09.
GenBank	AP014958	4e-40	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	4e-40	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBank	CT835407	4e-40	CT835407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122P15, full insert sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	6e-18	zinc-finger protein 1