PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00086.1.g02620.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 285aa    MW: 31300.2 Da    PI: 7.538
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00086.1.g02620.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.5e-072112442154
                                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     k +yp+++++++L +++gL+ +q+ +WF N+R +
  Zjn_sc00086.1.g02620.1.sm.mkhc 211 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 244
                                     569*****************************87 PP
2ELK271e-09165186122
                             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                     ELK++L+++Y+++L+++++E++
  Zjn_sc00086.1.g02620.1.sm.mkhc 165 ELKNELKQGYKEKLVDIREEIL 186
                                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.2E-192266IPR005540KNOX1
PfamPF037901.1E-152562IPR005540KNOX1
SMARTSM012568.1E-676133IPR005541KNOX2
PfamPF037917.4E-1084109IPR005541KNOX2
SMARTSM011880.0023165186IPR005539ELK domain
PROSITE profilePS5121310.057165185IPR005539ELK domain
PfamPF037891.7E-6165186IPR005539ELK domain
PROSITE profilePS5007111.386185248IPR001356Homeobox domain
SMARTSM003892.8E-10187252IPR001356Homeobox domain
SuperFamilySSF466891.03E-15187250IPR009057Homeodomain-like
CDDcd000862.05E-11188249No hitNo description
Gene3DG3DSA:1.10.10.601.3E-24192249IPR009057Homeodomain-like
PfamPF059207.6E-18205244IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGATAASSSS PTPGGFSPGG GEREKAAVAA HPLYERLLEA HVACLRVATP VDQLPRIDAQ  60
MAARSPTLAA AAGASAAGGP SGGEELDLFM THYVLLLCSF KEQLQQHVRA SPGESTGATM  120
SDDEDNQFDS EANIFDGNDC SDGMGFGPLM LTEGERSLVE RVRQELKNEL KQGYKEKLVD  180
IREEILRKRR AGKLPGDTAS VLKAWWQAHS KWPYPTEDDK ARLVQETGLQ LKQINNWFIN  240
QRKRNWHSNP TSSGEKTKKK RCHKMNYGSD APSNLDKARC IYTLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241260RKRNWHSNPTSSGEKTKKKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685101e-167BT068510.1 Zea mays full-length cDNA clone ZM_BFb0231A20 mRNA, complete cds.
GenBankBT0836591e-167BT083659.1 Zea mays full-length cDNA clone ZM_BFb0026A02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169973.11e-156putative knotted-like transcription factor family protein
SwissprotQ0E3C31e-151KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A3L6ELG01e-155A0A3L6ELG0_MAIZE; Homeobox protein knotted-1-like 2
TrEMBLC0PJP11e-155C0PJP1_MAIZE; Knotted related homeobox6
STRINGGRMZM2G370332_P021e-157(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-121KNOTTED1-like homeobox gene 4