PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00084.1.g00700.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 351aa MW: 37465.3 Da PI: 10.2738 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.6 | 3.3e-19 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G ++W++I+r ++ gR++k+c++rw + Zjn_sc00084.1.g00700.1.am.mk 18 KGPWSPEEDEALQRLVARHGARNWSLISRSIP-GRSGKSCRLRWCNQ 63 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55.3 | 1.6e-17 | 72 | 114 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ Zjn_sc00084.1.g00700.1.am.mk 72 PFTPEEDETILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 114 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.597 | 13 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-32 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-17 | 17 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-18 | 18 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-26 | 19 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.20E-16 | 20 | 62 | No hit | No description |
SMART | SM00717 | 7.1E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.809 | 70 | 119 | IPR017930 | Myb domain |
CDD | cd00167 | 4.72E-12 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-24 | 72 | 118 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.5E-15 | 72 | 114 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MASPSCRGGS SKDVDRIKGP WSPEEDEALQ RLVARHGARN WSLISRSIPG RSGKSCRLRW 60 CNQLSPQVEH RPFTPEEDET ILRAHARFGN KWATIARLLS GRTDNAIKNH WNSTLKRKYY 120 ASASGVAAGG ASVDLAAVAP VDEEEMRRPL KRTSSDGHPG LSFSPGSPSG SDVSDSSHHS 180 LPSVMPSSSA APAPTSSQQQ HVYRPVPRAG GVVVLPASMA PRPPSPPPPQ QPPPQAPATS 240 LSLSLSPPGL DRPDPSPSLS PAAPPPAHVQ QHPHPSAPSQ MPQPASLPFQ LHPPAPKPPA 300 PAPFSSEFLS MMKEMIRIEV RNYMSGSGLE PRSGADVHAA TQRMMGMAKI E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-39 | 15 | 118 | 4 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00632 | PBM | Transfer from PK28565.1 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679425 | 1e-132 | HF679425.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB19 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151336.1 | 1e-141 | sucrose responsive element binding protein | ||||
TrEMBL | B6TZ85 | 1e-140 | B6TZ85_MAIZE; Sucrose responsive element binding protein | ||||
STRING | GRMZM2G050550_P01 | 1e-140 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 5e-64 | myb domain protein 73 |