PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00078.1.g03330.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 591aa    MW: 64512.4 Da    PI: 4.3457
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00078.1.g03330.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.13.5e-53241521129
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknra 77 
                                     l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+yk+ePwdLp+  ++++++++wyfFs+ d+k+a+  r+nra
  Zjn_sc00078.1.g03330.1.sm.mkhc  24 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKIEPWDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRA 101
                                     579***************************.99***************4357888999********************* PP

                             NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                     t+ gyWk+tgkd+ev + + ++vg+kktLvf+ grapkg++t+Wvmheyrle
  Zjn_sc00078.1.g03330.1.sm.mkhc 102 TSGGYWKTTGKDREVRH-GLRVVGMKKTLVFHAGRAPKGQRTNWVMHEYRLE 152
                                     *****************.99******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-6119169IPR003441NAC domain
PROSITE profilePS5100559.27924169IPR003441NAC domain
PfamPF023651.8E-2826151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MTLPSSSSSS APPPPAAGTE ATSLAPGFRF HPTDEELVSY YLKRKVLGRP LKVDAIAEVD  60
LYKIEPWDLP ARSRLRSRDS QWYFFSRLDR KHANRARTNR ATSGGYWKTT GKDREVRHGL  120
RVVGMKKTLV FHAGRAPKGQ RTNWVMHEYR LEGDETPQDS FVVCRIFQKA GPGPQNGAQY  180
GATFIEEEWE EDDEDVGLLP VGGDAIEDAV AEREAPVAME KGYLQMSDLI QGLGDQTGNS  240
TIDLPDSDTS NNGNHSEDVD GSSGDILNDP NLGSSFLQYD ELGEQNNSLI SSDEFLELKD  300
FADATNLEYP LGAHSTIWPS DGWTWKTPDS FDDINGANNE IPPLPGDQTF QSDELEQLLQ  360
SIQEDTHLGS NATDPPHSSI SNSVMAEDDS VMFYDMPFDS AICEEGFTQP NGIHTAPTTN  420
ISGIDMVDDG IPYYDAIDDS LFDDILGSIQ QPAGSSSHAF NGPVLVQEAK SRTMGQKFVK  480
ILDAISAPPA FAAENNLHKT FGPISGARHN TVHVSAEVIS IGSLSVASRP DKWAVQKDEG  540
IVLLTGFEPE SRMHCGCNTI TAVLRGGFCL FFFSAIMLLV SYGVGLSICG K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-482316914168Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820240.10.0NAC domain-containing protein 53-like
TrEMBLA0A1E5WL630.0A0A1E5WL63_9POAL; NAC domain-containing protein 78
TrEMBLA0A2S3I4R10.0A0A2S3I4R1_9POAL; Uncharacterized protein
TrEMBLA0A2T7DAU20.0A0A2T7DAU2_9POAL; Uncharacterized protein
STRINGSi013361m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.15e-82NAC domain containing protein 2