PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00071.1.g03060.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 660aa MW: 73114.7 Da PI: 9.7203

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00071.1.g03060.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.3	4.6e-27	311	399	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 fY +YA +vGFsvr+++s++sk +++i++ +fvCs+eg+++e++ +k+r++ a+ r gC+a+l+v ++ d+kw+vtkl Zjn_sc00071.1.g03060.1.am.mk 311 FYIAYAGRVGFSVRIARSRRSKCSESIIMLRFVCSREGFSKEKRAVaGKKTRKRAASIREGCNAMLEVLRRGDNKWVVTKL 391 9************************************9998877467778888999******************* PP FAR1 82 eleHnHel 89 ++eHnHe+ Zjn_sc00071.1.g03060.1.am.mk 392 VKEHNHEV 399 ****95 PP
2	FAR1	59.6	1e-18	433	523	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtk 80 fY +YA++ GF+ r+++s+ks ++++ ++ ++vCs++ +++ ++++ ++k+ + +r gC+a +++ ++++++w+v+k Zjn_sc00071.1.g03060.1.am.mk 433 FYYSYASREGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRENNgeDTKRVHALDPSRNGCDALFEIVRKDKDVWMVSK 512 9*****************9.6777**********9999995455556677789****************** PP FAR1 81 leleHnHelap 91 l leH+Hel+p Zjn_sc00071.1.g03060.1.am.mk 513 LILEHTHELNP 523 ******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-25	311	399	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.1E-16	433	523	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence Send to blast
MAAAMTVTVV GHEEEEEELR RQARQLSVAK PCRAGCLMCT RAGEGRRCLA REEMTLWRAK 60 INKWKQGSTL SLGYLTSSVM AALPGCSWAL LARAVPLRSD GSRPRRRERP AQDRRRNLGG 120 ATSNLRATSA LSCKAALPSP VELFFAQQCF ASRGSSVCTT PWISAVTLGT KALCLDETSS 180 ILATTFERGS FAGGDASQAC GTSSGFRFPV PVPRLVAEQG MMEPQATELE DDSINFWASL 240 GVSPTVDQMP LHGVQVVEHQ SQPLLAAAAA AAAAQSQSQS VCKDLFPVES ESCLEPQLGM 300 EFDSGEAAKT FYIAYAGRVG FSVRIARSRR SKCSESIIML RFVCSREGFS KEKRAVAGKK 360 TRKRAASIRE GCNAMLEVLR RGDNKWVVTK LVKEHNHEVG LPSRVHYIAI ETDAVIDPYV 420 GMEFESLESA KTFYYSYASR EGFEARVRQS RKSQDESLKM LKLVCSRHRY HSGRENNGED 480 TKRVHALDPS RNGCDALFEI VRKDKDVWMV SKLILEHTHE LNPEPDSRVR CVRSQDRKQP 540 MHTGTIRDLL KKHAGTINML TTVASDLGTE MKREEGWTHF PPKHGGCIRL SSQSIIILGA 600 SFQSQADVSQ QRFLSAHVSI RLISPTKALA RRPMISPRRR DRGRMCVVAG VKLVAERIEH

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence Send to blast

MAAAMTVTVV GHEEEEEELR RQARQLSVAK PCRAGCLMCT RAGEGRRCLA REEMTLWRAK  60
INKWKQGSTL SLGYLTSSVM AALPGCSWAL LARAVPLRSD GSRPRRRERP AQDRRRNLGG  120
ATSNLRATSA LSCKAALPSP VELFFAQQCF ASRGSSVCTT PWISAVTLGT KALCLDETSS  180
ILATTFERGS FAGGDASQAC GTSSGFRFPV PVPRLVAEQG MMEPQATELE DDSINFWASL  240
GVSPTVDQMP LHGVQVVEHQ SQPLLAAAAA AAAAQSQSQS VCKDLFPVES ESCLEPQLGM  300
EFDSGEAAKT FYIAYAGRVG FSVRIARSRR SKCSESIIML RFVCSREGFS KEKRAVAGKK  360
TRKRAASIRE GCNAMLEVLR RGDNKWVVTK LVKEHNHEVG LPSRVHYIAI ETDAVIDPYV  420
GMEFESLESA KTFYYSYASR EGFEARVRQS RKSQDESLKM LKLVCSRHRY HSGRENNGED  480
TKRVHALDPS RNGCDALFEI VRKDKDVWMV SKLILEHTHE LNPEPDSRVR CVRSQDRKQP  540
MHTGTIRDLL KKHAGTINML TTVASDLGTE MKREEGWTHF PPKHGGCIRL SSQSIIILGA  600
SFQSQADVSQ QRFLSAHVSI RLISPTKALA RRPMISPRRR DRGRMCVVAG VKLVAERIEH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021320512.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021320514.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1E5VVU0	0.0	A0A1E5VVU0_9POAL; Uncharacterized protein
TrEMBL	A0A1Z5R874	0.0	A0A1Z5R874_SORBI; Uncharacterized protein
STRING	Pavir.Fa01859.1.p	0.0	(Panicum virgatum)
STRING	Sb07g004380.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-30	FAR1-related sequence 7