PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00071.1.g02550.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 612aa    MW: 68362.7 Da    PI: 4.8335
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00071.1.g02550.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.7e-5291421128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknra 77 
                                     lp GfrFhPtdeelv +yLk k++g+ +++ evi+e+d++k+ePwdLp k  +++e+ ew+fF+++d+ky++g+r+nra
  Zjn_sc00071.1.g02550.1.sm.mkhc   9 LPLGFRFHPTDEELVRHYLKGKITGQINSEVEVIPEIDVCKCEPWDLPdKsLIRSEDPEWFFFAPKDRKYPNGSRSNRA 87 
                                     699************************9999****************96446677888********************* PP

                             NAM  78 tksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     t++gyWkatgkd+ + sk    k++++g+kktLvf+kgrapkge+t W+mheyr 
  Zjn_sc00071.1.g02550.1.sm.mkhc  88 TEAGYWKATGKDRVIRSKgdkrKQHVIGMKKTLVFHKGRAPKGERTGWIMHEYRT 142
                                     *****************988767777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-583163IPR003441NAC domain
PROSITE profilePS5100556.5249163IPR003441NAC domain
PfamPF023651.5E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQINSEVE VIPEIDVCKC EPWDLPDKSL  60
IRSEDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIRSKGDKRK QHVIGMKKTL  120
VFHKGRAPKG ERTGWIMHEY RTTEPEFECG EQGSYVLYRL FCKQEEKNER LTPEEMDRSG  180
YSPTTPRSSP NNIEANEEAF TPLNKESPES TLHDSPTNLP NSVETHALSL TRWLVDRTDN  240
SAANAVNVSK TPLNGHIDGI AKVDPSVGGV TQLIDSQQQH NGDPNHFAAG SAPILQHEEN  300
GFFNFQQGMM GFDGNVNAPD AIDEFLNQAL TDPDEHSSTT SKVQYDSDPG IMAPEFGNHG  360
IMQGELPDDQ AWWAGLNFDL DEPNSLLPYD TTDPDVLSMD SGAESLHDLF NGWSTEPAVQ  420
GTGITIMPRQ SQSNVQQNNL FLRQGIANRR LRLQEYLSPN VESATNVDCE DKASCTVTSD  480
YLDEATEEST AEKGEPYYED DAESTGNTIR SRHPAPSSSA TSSFTQQGTA VRRLRLQSDL  540
KTDALKAVSE SKSVPRRRRT SEKNDEITKQ EDGFDSLVRA PGKKRGFQSH LFWLVLSVAV  600
LLLLCVGVYG WA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-45816416166NO APICAL MERISTEM PROTEIN
1ut4_B3e-45816416166NO APICAL MERISTEM PROTEIN
1ut7_A3e-45816416166NO APICAL MERISTEM PROTEIN
1ut7_B3e-45816416166NO APICAL MERISTEM PROTEIN
3swm_A3e-45816419169NAC domain-containing protein 19
3swm_B3e-45816419169NAC domain-containing protein 19
3swm_C3e-45816419169NAC domain-containing protein 19
3swm_D3e-45816419169NAC domain-containing protein 19
3swp_A3e-45816419169NAC domain-containing protein 19
3swp_B3e-45816419169NAC domain-containing protein 19
3swp_C3e-45816419169NAC domain-containing protein 19
3swp_D3e-45816419169NAC domain-containing protein 19
4dul_A3e-45816416166NAC domain-containing protein 19
4dul_B3e-45816416166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445085.10.0protein NTM1-like 9 isoform X2
RefseqXP_025820792.10.0protein NTM1-like 9
TrEMBLA0A0A9CTY00.0A0A0A9CTY0_ARUDO; Uncharacterized protein
STRINGSb07g003900.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.16e-71NAC transcription factor-like 9