PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00069.1.g03260.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 467aa    MW: 50481.7 Da    PI: 7.0856
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00069.1.g03260.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.4e-094044421854
                                   HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   +Fe+   +yp+ +e+e LA++ gL+ +qV++WF N R +
  Zjn_sc00069.1.g03260.1.sm.mk 404 MFENflRPYPKDSEKEMLAARSGLSRSQVSNWFINARVR 442
                                   57766689*****************************88 PP
2BELL22.62.7e-08272339572
                          BELL   5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                   +++ ++ Ll+ll+ +d+r +q+ +++q  +s +  ++  g  ++ + +   a+S  +r L+ +i+  i
  Zjn_sc00069.1.g03260.1.sm.mk 272 HHRLRNDLLKLLQLMDQRCNQCLDEMQSAASKYGSMVRPGGGALSAPFSYTAVSAMHRRLRARIIAEI 339
                                   5666789*********************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075262.4E-18208335IPR006563POX domain
PROSITE profilePS5007111.985383446IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-25385457IPR009057Homeodomain-like
SMARTSM003898.9E-8386450IPR001356Homeobox domain
CDDcd000862.80E-12386447No hitNo description
SuperFamilySSF466897.27E-16386454IPR009057Homeodomain-like
PfamPF059207.3E-16403442IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MGNASCQQLG VDAMMSNSCF DSNMVGADVA TMVHVPEYMA HDGSLGLGGH FLADGGAVLA  60
GQLQLVRPAV PQSLSPQEVH GAFSVASGYG PSPSDVTAAL PPTAAKLAGE PESSWLQEQY  120
HGPTWFSGAG FRDPFTAAAR ELSLRLAAES SSTGTVVNLP DQSSDVSCSG LTHAGSSAAH  180
GLIQPPYCGG GDDQLGRARR GRPHFSHVLS RSGYAHIVQQ TLDEFVGCLL QDVAGATGSV  240
VGEAHCPLPS SSSSITTPSD QFMFAGAEEH PHHRLRNDLL KLLQLMDQRC NQCLDEMQSA  300
ASKYGSMVRP GGGALSAPFS YTAVSAMHRR LRARIIAEIA SVTQTQRGRE QTSSGSLADR  360
ERSWESAFIQ KHWALRQLRR GDQQSWRPQR GLPEKSVAVL KAWMFENFLR PYPKDSEKEM  420
LAARSGLSRS QVSNWFINAR VRLWKPMIEE MYEDLKKVSA DREGAPF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5466441e-131AB546644.1 Triticum aestivum WBLH2-1 mRNA for BEL1-type homeodomain protein, complete cds.
GenBankAB5466451e-131AB546645.1 Triticum aestivum WBLH2-2 mRNA for BEL1-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813413.10.0homeobox protein ATH1-like
TrEMBLA0A3L6S1C50.0A0A3L6S1C5_PANMI; Homeobox protein ATH1-like
STRINGPavir.Db01271.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.13e-44homeobox gene 1