PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00068.1.g03660.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 427aa MW: 46544.3 Da PI: 6.7074 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.6e-17 | 58 | 102 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE+e++++a k++G W+ I +++g ++t+ q++s+ qk+ Zjn_sc00068.1.g03660.1.am.mkhc 58 REKWTEEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 102 789*****************55.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.36E-16 | 52 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.056 | 53 | 107 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-10 | 55 | 105 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.8E-16 | 56 | 105 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.6E-14 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 58 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-11 | 60 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MEVAVAQVEE RDGADSSCLR RPLDVVKPPV VADAMQPKER MDGYPVKVRK PYTITKQREK 60 WTEEEHEKFL EALKLYGRSW RQIQEHIGTK TAVQIRSHAQ KFFSKVVREP GASNVIEIPP 120 PRPKRKPLHP YPRKCANSST VANLKLAPVS PSSGSDQENG SPVSVLSAVQ SDAFGSSISN 180 LSTGCMSPVS SDDGNNARVM VNGEEILPSK QAEIDQSPKE IKQDNSDGDL SEEGSLRETS 240 LKLFGKTVTI PDPMKVCSSD GGRGEGERCT QSACKEIFEA SSIGSATTCA APTGWVLPYH 300 YFPYHMGESM DPRISAPLHV WWPYYSFPVS QPRELGAVLH GEGTGESDTG KSPSVESSAD 360 SMGNVQTRTP IDCEVAKESL GAIQTPDSAL CFELKPSVNS AFVPVKPSNR GSQSTRGFVP 420 YKRCKVE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:23371945}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:19805390}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ024049 | 1e-104 | FJ024049.1 Zea mays MYB-like protein E1 (MYBE1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966527.1 | 0.0 | uncharacterized protein LOC101785788 | ||||
Swissprot | F4K5X6 | 1e-46 | RVE2_ARATH; Protein REVEILLE 2 | ||||
TrEMBL | A0A3L6S0P2 | 0.0 | A0A3L6S0P2_PANMI; Uncharacterized protein | ||||
STRING | Si006457m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7783 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 2e-41 | MYB_related family protein |
Publications ? help Back to Top | |||
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