PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00068.1.g00690.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 175aa MW: 19238.6 Da PI: 6.7903 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.8 | 2.1e-27 | 18 | 67 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt+eLH++Fveave LGG+++AtPk+il+lm+v+g++++h+kSHLQ Zjn_sc00068.1.g00690.1.sm.mk 18 PRMRWTEELHRQFVEAVECLGGKDEATPKRILQLMGVDGVSISHIKSHLQ 67 8************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-25 | 14 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.384 | 14 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-14 | 18 | 67 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-22 | 18 | 67 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.3E-8 | 19 | 67 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MRYFERKGVR QYNRSEVPRM RWTEELHRQF VEAVECLGGK DEATPKRILQ LMGVDGVSIS 60 HIKSHLQYPS GKQLPQVDIN RSEQQQAIRP NNNSFSKKPA EKQKGCDLTL SIGMWPEDAN 120 SDADGSSTIS EELAAPPAGA EPFGSPAAGG RFAAVKQESA PALNLDLTIS SSWLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-16 | 19 | 67 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-16 | 19 | 67 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-16 | 19 | 67 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-16 | 19 | 67 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-16 | 19 | 67 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-16 | 19 | 67 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-16 | 19 | 67 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-16 | 19 | 67 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU406763 | 9e-70 | CU406763.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C005B16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810426.1 | 3e-39 | probable transcription factor KAN3 | ||||
TrEMBL | T1MM38 | 4e-49 | T1MM38_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_18893-P1 | 7e-50 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5493 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 2e-23 | G2-like family protein |