PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00068.1.g00670.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 310aa    MW: 33273.6 Da    PI: 6.2583
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00068.1.g00670.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.6e-1376120147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  Zjn_sc00068.1.g00670.1.sm.mkhc  76 RESWTEPEHDRFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 120
                                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-1670126IPR009057Homeodomain-like
PROSITE profilePS5129414.7571125IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-674126IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-1974123IPR006447Myb domain, plants
SMARTSM007176.7E-1075123IPR001005SANT/Myb domain
PfamPF002491.2E-1076120IPR001005SANT/Myb domain
CDDcd001671.87E-778121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MVSMSTTPTP LDAAKSASVA GGGVDEGGGG GGKQPLMRGA AVAMVAPPPM AVPAPDPAAG  60
EEVRKVRKPY TITKSRESWT EPEHDRFLEA LQLFDRDWKK IEAYVGSKTV IQIRSHAQKY  120
FLKVQKNGTG EHLPPPRPKR KAAHPYPQKA SKNVSQAVLP QQLPPLGDQG SVMSVDTSNV  180
VRNTNPSGAG PSWDNALVQP SNASQGAVVT NNCSSSIESP SGTWPASEAV EQENMVPPLR  240
AMPDFARVYS FLGSIFDPDT SGHLQRLKAM DPIDVETVLL LMKNLSTNLT SPDFEEHVLG  300
VFDKDNDIAE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812931.11e-161protein REVEILLE 6-like
SwissprotQ8H0W38e-89RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2T7DVG31e-160A0A2T7DVG3_9POAL; Uncharacterized protein
STRINGOB06G32000.11e-158(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.18e-77MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]