PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00068.1.g00270.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 199aa    MW: 22016.9 Da    PI: 8.6761
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00068.1.g00270.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_154.33e-1782133455
                                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                                      kr rr+ +NRe+ArrsR+RK+a+++eLe  v++L++eN +L k+l e +++
  Zjn_sc00068.1.g00270.1.sm.mkhc  82 TKRIRRMVSNRESARRSRRRKQAQLAELESQVEQLKGENATLFKQLAEANQQ 133
                                     69*****************************************887776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.1E-1677143IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.43881133IPR004827Basic-leucine zipper domain
PfamPF001704.3E-1581133IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-1383134No hitNo description
SuperFamilySSF579591.19E-1283135No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MLQQNTMDGS SDDNLWWSGS IRTPEPESSI TAECQRASVS AASPRGTSST NHGHESQSDS  60
DSESLIDVEA IPCERRTKSL QTKRIRRMVS NRESARRSRR RKQAQLAELE SQVEQLKGEN  120
ATLFKQLAEA NQQFTTAVTD NRILKSDVEA LRVKVKMAED MVARSAMSCG LGDLGVAPLV  180
NSRKMCQALG MLTAMMLRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102RRSRRRKQ
297102SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813585.11e-78bZIP transcription factor RISBZ5-like
SwissprotQ6H5004e-70RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A0A9PGC17e-78A0A0A9PGC1_ARUDO; Uncharacterized protein
STRINGPavir.Da00268.1.p2e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-29basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]