PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00067.1.g00260.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 252aa MW: 28437.7 Da PI: 10.0968 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.6e-17 | 153 | 200 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +lv +v+++G+g+W++++ g+ R+ k+c++rw +yl Zjn_sc00067.1.g00260.1.am.mk 153 KGPWTSEEDIILVSYVQEHGPGNWRSVPISTGLMRCSKSCRLRWTNYL 200 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.385 | 148 | 204 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-20 | 151 | 199 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-12 | 152 | 202 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 153 | 200 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.98E-20 | 154 | 224 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.93E-11 | 155 | 200 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-5 | 200 | 223 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MPSPPERYIW WHLYSPTEAR GHYRPITLHQ LAGRVTGVAN SPIEGNNMTV PAAVADATDN 60 KQPPSIIVIQ SAAAEKSMIG WLLSSSWQMR FLPDGGGLSC TLHCRRQQGP EISSILTTID 120 VDNRQQLAQP SCGRPSPEKM GRPPCCDMVG IKKGPWTSEE DIILVSYVQE HGPGNWRSVP 180 ISTGLMRCSK SCRLRWTNYL RPGIRRGNFT PHEEGIIVHL HVRARPVNQH KTHAKMVKNT 240 EMFWCRKTLR RF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728308 | 9e-77 | KJ728308.1 Zea mays clone pUT6588 MYB transcription factor (MYB69) mRNA, partial cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP66120 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 2e-52 | myb domain protein 60 |