PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00066.1.g00640.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 20600.2 Da PI: 7.9217 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.3 | 6.2e-39 | 19 | 120 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C aCk+lrr+C++dCv+apyf ++q +++fa++h++FGasn +kll++lp +r +a+ +++yeA+ar+rdPvyG+v+ i Zjn_sc00066.1.g00640.1.am.mk 19 PCGACKFLRRRCVPDCVFAPYFSNDQgAARFAAIHRVFGASNASKLLSHLPVADRGEAVVTIAYEAQARLRDPVYGCVAQI 99 7************************989***************************************************** PP DUF260 81 lklqqqleqlkaelallkeel 101 ++lqqq++ l+a+l ++k++l Zjn_sc00066.1.g00640.1.am.mk 100 FALQQQVAILQAQLTQAKAQL 120 ***************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.961 | 18 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-38 | 19 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MAGAVAANGE ACAPGAGSPC GACKFLRRRC VPDCVFAPYF SNDQGAARFA AIHRVFGASN 60 ASKLLSHLPV ADRGEAVVTI AYEAQARLRD PVYGCVAQIF ALQQQVAILQ AQLTQAKAQL 120 ACGGGVQQGG SAHSPVSHHQ WSDNSVGSLL RQDNSCFPSP ADFRGDVFAT QHCARADAGD 180 LQYLAQAMAR CHNHSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-39 | 14 | 126 | 6 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-39 | 14 | 126 | 6 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00309 | DAP | Transfer from AT2G42430 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454795.1 | 5e-86 | LOB domain-containing protein 16 isoform X2 | ||||
Swissprot | Q9SLB7 | 6e-58 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A1E5WH05 | 2e-90 | A0A1E5WH05_9POAL; LOB domain-containing protein 16 | ||||
STRING | Sb04g037550.1 | 2e-85 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10599 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 3e-37 | lateral organ boundaries-domain 16 |