PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00066.1.g00510.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 630aa    MW: 68712.6 Da    PI: 4.361
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00066.1.g00510.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.14.4e-50161521128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya........ 69 
                                     l+pGfrFhPtdeelv++yL++++ g++l++ ++i+evd+y++ePwdLp  +++++++++wyfF++ d+k +        
  Zjn_sc00066.1.g00510.1.sm.mkhc  16 LAPGFRFHPTDEELVSYYLRRRILGRRLRV-DAIAEVDLYRLEPWDLPslSSIRSRDNQWYFFTRLDRKITgagaggrg 93 
                                     579***************************.99***************5448889999***********9977777766 PP

                             NAM  70 .tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                       g+r+nrat++gyWk+tgkd+ev++ +g+lvg+kktLvf++grapkg +t+Wvmheyrl
  Zjn_sc00066.1.g00510.1.sm.mkhc  94 gPGNRTNRATQQGYWKTTGKDREVYH-RGKLVGMKKTLVFHNGRAPKGARTNWVMHEYRL 152
                                     5567**********************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5612170IPR003441NAC domain
PROSITE profilePS5100556.03816170IPR003441NAC domain
PfamPF023652.1E-2718152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MSNLSPLDSS PAEVRLAPGF RFHPTDEELV SYYLRRRILG RRLRVDAIAE VDLYRLEPWD  60
LPSLSSIRSR DNQWYFFTRL DRKITGAGAG GRGGPGNRTN RATQQGYWKT TGKDREVYHR  120
GKLVGMKKTL VFHNGRAPKG ARTNWVMHEY RLIDADGPQD LLVVCRIFQK FGSGPQNGAQ  180
YGAPYMEEEW EDDDDAVEKG AAIGASANVA ATSNAADEES NEEEENGYSK ASELAQAHEM  240
LTPPDMAALQ AQGSNETSDG SCADAAISLE EIRSSTVSAE IFGRPEGHNA ADDKFSAAGF  300
SGCPTRDDGY VGQGSDPANG KSTNWPLRVY CNQNPVNETI SADEFFDTEN VTNENAYSGQ  360
QQICQSDYQN LNLQADGFVA QRQVDDGMAF YDAPPNWVDG SDDIYLSDIF NEPLGNQSLF  420
DGDDLMDYFV DAPENDFKYD MVGSAEGSGD QLTEMSNFAQ KGDYKDNSTF DGISKTSVAN  480
GHSGASSSCF HEDQYPENAV QADKPLGKLA SMLGSIPAAP AFASEDPPAA RKSLLTGVNP  540
SSIRVTAGIV QLGGLNFTAS EHRPLQKNGD FSLLVSFTME SNVASKSLSF EPDTQVGAIP  600
MVMRGGLYFF FVSAMILILS YKVGLCIYNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-451215211140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0641330.0BT064133.1 Zea mays full-length cDNA clone ZM_BFc0140G07 mRNA, complete cds.
GenBankBT0675810.0BT067581.1 Zea mays full-length cDNA clone ZM_BFc0097N06 mRNA, complete cds.
GenBankEU9759360.0EU975936.1 Zea mays clone 505923 NAC domain-containing protein 78 mRNA, complete cds.
GenBankKJ7269850.0KJ726985.1 Zea mays clone pUT3686 NAC transcription factor (NAC26) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817703.10.0NAC domain-containing protein 53-like
TrEMBLA0A2S3GUQ20.0A0A2S3GUQ2_9POAL; Uncharacterized protein
STRINGPavir.Ab03009.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.19e-61NAC domain containing protein 2