PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00065.1.g02260.1.cf.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 309aa    MW: 35761.5 Da    PI: 10.2847
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00065.1.g02260.1.cf.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.44e-2127115299
                                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                     fk+l    ++ ++rl++p +f++++g  +++  ++tl+++sg  ++v++  +++ g+ v+++GWk Fv+a++Lk gDf+
  Zjn_sc00065.1.g02260.1.cf.mkhc  27 FKIL--VGNF-RSRLMIPDNFVQHFGARPTG--MVTLKSRSGYAFDVEV--TNRLGKLVFQTGWKAFVNAHDLKRGDFL 98 
                                     5555..3344.567********777888766..8***************..**************************** PP

                                     EEEE-SSSEE..EEEEE-S CS
                              B3  81 vFkldgrsefelvvkvfrk 99 
                                     vFk++g s+f  +v +f+ 
  Zjn_sc00065.1.g02260.1.cf.mkhc  99 VFKYNGFSQF--KVLIFDP 115
                                     ****988999..9999885 PP
2B345.81.1e-142253071498
                                     T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                              B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                                     + + ++ k+++ +       e+ +  l    g+sWev+++++k++ r   + kGWk+F+++n+L+ gD ++F+ +++++
  Zjn_sc00065.1.g02260.1.cf.mkhc 225 QSMNISTKYCNGYlpF----ED-ETLLLCHGGKSWEVRCCIQKGRVRfKRFLKGWKQFAHDNHLQLGDLCLFEQVKNKK 298
                                     5677888888666432....22.45666779********77666666545558********************999999 PP

                                     E..EEEEE- CS
                              B3  90 felvvkvfr 98 
                                     ++++v++ r
  Zjn_sc00065.1.g02260.1.cf.mkhc 299 KTMNVHIMR 307
                                     99****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-2519128IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-2521123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.6923116IPR003340B3 DNA binding domain
CDDcd100172.71E-2124114No hitNo description
PfamPF023622.4E-1826114IPR003340B3 DNA binding domain
SMARTSM010194.2E-1326116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-20203307IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-19204307IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-14209305No hitNo description
PROSITE profilePS5086311.068212309IPR003340B3 DNA binding domain
SMARTSM010191.7E-9214309IPR003340B3 DNA binding domain
PfamPF023622.6E-13222307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MRKPHKGCKE MNGHHKPNHK DKDRHFFKIL VGNFRSRLMI PDNFVQHFGA RPTGMVTLKS  60
RSGYAFDVEV TNRLGKLVFQ TGWKAFVNAH DLKRGDFLVF KYNGFSQFKV LIFDPSCCEK  120
VLPCPLEKNE IEMCKEPVKS SSSCVNPSMK SPESNGKAWT KREGRYFSSS EDQKSHDVPR  180
YIVPNGTKLT YAQKKKLNEK VQAIHSEIPI YVAIVKNTSI FGRYQSMNIS TKYCNGYLPF  240
EDETLLLCHG GKSWEVRCCI QKGRVRFKRF LKGWKQFAHD NHLQLGDLCL FEQVKNKKKT  300
MNVHIMRGI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982411.11e-109putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A368SHK21e-108A0A368SHK2_SETIT; Uncharacterized protein
STRINGPavir.Ia01270.1.p1e-111(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-24B3 family protein