PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00065.1.g00770.1.cf.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | YABBY | ||||||||
Protein Properties | Length: 170aa MW: 19335.1 Da PI: 9.3482 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 226.9 | 5.2e-70 | 4 | 162 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveee 80 +++ ++e+vCyv+CnfCntilavsvPs++++++vtvrCGhCts+lsvnl+ q l++++h l+++ kv++ Zjn_sc00065.1.g00770.1.cf.mkhc 4 QITPAPEHVCYVHCNFCNTILAVSVPSNTMLNIVTVRCGHCTSMLSVNLRGLIQSLPVQNH--------LQDNFKVHNI 74 56789*******************************************************9........7889999999 PP YABBY 81 nlksnvekeesastsvssekl.se.nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaa 157 ++++n +++ + ++ ++ ++ s+ ++++++ + +r Pekr rvPsayn+fikeei+rikas Pdishreafs+aa Zjn_sc00065.1.g00770.1.cf.mkhc 75 SFTENCSQYAPSPSKYRTPSMfSTmHDQDHMLH----VRAPEKRHRVPSAYNKFIKEEIRRIKASKPDISHREAFSTAA 149 999999998877766666655455044555555....89**************************************** PP YABBY 158 knWahfPkihfgl 170 knWahfP+ihfgl Zjn_sc00065.1.g00770.1.cf.mkhc 150 KNWAHFPNIHFGL 162 ***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.2E-69 | 9 | 162 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.3E-6 | 104 | 156 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.8E-4 | 108 | 156 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MSSQITPAPE HVCYVHCNFC NTILAVSVPS NTMLNIVTVR CGHCTSMLSV NLRGLIQSLP 60 VQNHLQDNFK VHNISFTENC SQYAPSPSKY RTPSMFSTMH DQDHMLHVRA PEKRHRVPSA 120 YNKFIKEEIR RIKASKPDIS HREAFSTAAK NWAHFPNIHF GLGPHESNKN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795820.1 | 1e-105 | protein YABBY 2-like isoform X4 | ||||
Swissprot | Q10FZ7 | 1e-97 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A2T7C330 | 1e-105 | A0A2T7C330_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01130.1.p | 1e-99 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-57 | YABBY family protein |