PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00064.1.g01090.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 314aa MW: 34109.8 Da PI: 6.9239

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00064.1.g01090.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.1	1.8e-09	110	165	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C.......TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as....kapskKlsKaeiLekAveYIksL 54 h ++Er+RR+++ + f++L +++P ++ + +K++ L ++eY+++L Zjn_sc00064.1.g01090.1.am.mk 110 EHVIAERKRREKMHHQFATLASIVPDiTKwmmlSEFNLQTDKVSLLASTIEYVHKL 165 6999********************666**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-12	102	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.417	106	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-7	110	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-12	110	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.26E-9	111	170	No hit	No description
SMART	SM00353	1.8E-9	112	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MQKLAESLAN ELWGQPQEQQ DNQQEQCGCR SPSLTGSHFV GHANSTNRTT ISSGVSNNMF 60 PFTEASSSPV NLAAKEYTQQ GVYSTTTVKC CSSSMTAKGG ARRSTSSVQE HVIAERKRRE 120 KMHHQFATLA SIVPDITKWM MLSEFNLQTD KVSLLASTIE YVHKLRDRLK ALQDELQTTG 180 SNTEESPAFD ADCCVAGSKP NDGGDEAVSP KIEVDVRGTT LLLRLVCREK KGVLLTVLME 240 LEKHRISIVN TNVVPFAESS LNITITAQLE ASIRRVALPI ACALAGPAAL SMLGGASNML 300 NLAPEHSTIL YITI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	119	ERKRRE
2	115	120	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022685471.1	1e-87	transcription factor bHLH19-like
TrEMBL	K4ACR6	2e-86	K4ACR6_SETIT; Uncharacterized protein
STRING	Si036673m	4e-87	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13896	17	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	2e-21	bHLH family protein