PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00063.1.g02260.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 630aa    MW: 67997.8 Da    PI: 8.1738
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00063.1.g02260.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-16306353148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg W++eEde+l++++  +G g+W+ ++++ g+ R++k+c++rw +yl
  Zjn_sc00063.1.g02260.1.am.mk 306 RGLWSPEEDEKLIRYISTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 353
                                   788*******************************************97 PP
2Myb_DNA-binding53.17.3e-17359403147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rgr+++eE++l++ +++  G++ W+ Ia++++ gRt++++k++w+++
  Zjn_sc00063.1.g02260.1.am.mk 359 RGRFSAEEEKLIISLHAIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 403
                                   89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.944301353IPR017930Myb domain
SuperFamilySSF466892.66E-29304400IPR009057Homeodomain-like
SMARTSM007176.5E-13305355IPR001005SANT/Myb domain
PfamPF002492.5E-15306353IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-24307360IPR009057Homeodomain-like
CDDcd001677.74E-12309353No hitNo description
PROSITE profilePS5129425.49354408IPR017930Myb domain
SMARTSM007174.4E-17358406IPR001005SANT/Myb domain
PfamPF002491.8E-15359403IPR001005SANT/Myb domain
CDDcd001671.57E-12361404No hitNo description
Gene3DG3DSA:1.10.10.602.1E-24361408IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MAAAAAEASP RRSVWTGSAR GRRRGTGKGG AAAAKGFALF LAALFPNDGG GEVERGWSGR  60
FESRGRRNGG SSTIDLACSR NIRPGVISWL FVRPHRPALS LVPIGSPVHM CASCGPVVHQ  120
SLEPAEPTSC MRTYCHCPGD NETDELKACG ARNRALQLVP PENPDMRCSF LKLRANHVPI  180
SALTKRQGAG KFGNYAASVR WLPSIRVTAE LTCTVSVKQP RDLCDRSRTD GDGGVVRATA  240
AASSEVHDRG PGKRGERGPG GCFSLGPVPC GGWLSAAPIV HVLFFLRSYR WACVGGHALL  300
CQKVKRGLWS PEEDEKLIRY ISTHGYGCWS EVPEKAGLQR CGKSCRLRWI NYLRPDIRRG  360
RFSAEEEKLI ISLHAIVGNR WAHIASHLPG RTDNEIKNYW NSWIKKKIRK PASTTSSSSV  420
SPPCSTVTAA SDAAHGHLQT LPFSVADNQL DAMIINQGLA LPSSTKLAVA GQDSPPTAPL  480
PPQHCPFFMF DTSVSPPSSL SPPTAAQLQH PFLTFTTAAV DVPSYQLPPL VDGMSMNMSA  540
LDCSSLGDHE RGHDHDGNNG QAGPGMSSNG GCCGYEQQEQ QQQLGHDQWD DESAQHLLMW  600
DDDQELTPSN LEVMQTGAHS LLFMGPNDHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-273064087108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0919261e-144FP091926.1 Phyllostachys edulis cDNA clone: bphylf039g20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822193.11e-151myb-related protein 308
TrEMBLA0A2T7D3G11e-162A0A2T7D3G1_9POAL; Uncharacterized protein
STRINGPavir.Fb00364.1.p1e-152(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60323757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-72myb domain protein 103