PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00063.1.g01580.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 370aa MW: 38559.4 Da PI: 7.0632 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31 | 4.4e-10 | 106 | 131 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ Zjn_sc00063.1.g01580.1.am.mkhc 106 FKTKLCCKFRA-GTCPYVTNCNFAHGM 131 69*********.*************95 PP | |||||||
2 | zf-CCCH | 18.1 | 4.7e-06 | 186 | 211 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ Zjn_sc00063.1.g01580.1.am.mkhc 186 YKGRHCKKFYTEEGCPYGDACTFLHD 211 78888********************7 PP | |||||||
3 | zf-CCCH | 43.3 | 5.9e-14 | 250 | 275 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Zjn_sc00063.1.g01580.1.am.mkhc 250 WKTRICNKWEMTGYCPFGSKCHFAHG 275 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.92E-8 | 103 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-14 | 103 | 138 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 105 | 132 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 105 | 131 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-7 | 106 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.3 | 185 | 212 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 185 | 213 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-8 | 185 | 213 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-7 | 185 | 213 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.1E-18 | 243 | 279 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-10 | 246 | 280 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-9 | 249 | 276 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 249 | 277 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-11 | 250 | 275 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MDYSNAIHII PDAEGPDAWA NSAPPPAAGD SAIWATEDDY RQWNADPGSG GGGYGDWNSS 60 RAGSEQPPPG KKPRGGVGSS AGGGGGGDGG GGGSSSKSRA IGKMFFKTKL CCKFRAGTCP 120 YVTNCNFAHG MEELRKPPPN WQEIVAAHEE ATELREEHQI PIVTSASVVA GSGDGGGGGA 180 QGGRAYKGRH CKKFYTEEGC PYGDACTFLH DEQSKARESV AISLSPSVGG GGYNAAASAN 240 GVQVQKPSNW KTRICNKWEM TGYCPFGSKC HFAHGAAELH KYGGGLVDLD GNTASTPDSK 300 QAGASAKAPT DAAAASNAIL PHADVYHLGI QSQRSGIGSQ RSGQVQRPIQ KWKGPDKISR 360 IYGDWIDENE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021321178.1 | 0.0 | zinc finger CCCH domain-containing protein 56 isoform X2 | ||||
Swissprot | Q84UQ3 | 1e-177 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A1B6PFN8 | 0.0 | A0A1B6PFN8_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Fb00417.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6615 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 7e-97 | C3H family protein |