PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00060.1.g01440.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 357aa MW: 38916.4 Da PI: 5.0426

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00060.1.g01440.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	46	1.7e-14	12	147	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyat.gkrk 74 f F+P+d lv + L++k+ g +++ + + + d+++v P++L + + +++ ++ yfFs+++ +++ +k++ Zjn_sc00060.1.g01440.1.sm.mk 12 FMFSPSDRRLV-DILRAKIGGGDFPNAAYFVDDDVCSVRPEELVRkhsmparvrsREAGDGRQFYFFSPESFVSTRtKKQR 91 89*******.88*****999888**********73367777554322235568899999876655313333 PP NAM 75 nra....tksgyWkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128 +r+ + W+ g+ k v ++ g + + f+ k ++ k W+m ey+l Zjn_sc00060.1.g01440.1.sm.mk 92 KRTidrtSGNECWHGEGSGKMVDG---TNDGYMTKFSFHiKIAGETVAKPGWLMTEYSL 147 343232133567**888855...567888889999444667777*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.389	8	163	IPR003441	NAC domain
Pfam	PF02365	2.2E-10	12	147	IPR003441	NAC domain
SuperFamily	SSF101941	7.98E-20	12	163	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MSAFPAAEDD SFMFSPSDRR LVDILRAKIG GGDFPNAAYF VDDDVCSVRP EELVRKHSMP 60 ARVRSREAGD GRQFYFFSPE SFVSTRTKKQ RKRTIDRTSG NECWHGEGSG KMVDGTNDGY 120 MTKFSFHIKI AGETVAKPGW LMTEYSLKGT GAGGWVLCKI YKSPRGPGRS KAPSSLENKR 180 KAADDPEDAR PSTKERRQGQ IDANGDLEGD QPVPSGDLPS VNPTVQTVYG ALTDGEVIDA 240 LAGGVTVDEL IPSTTEDRQP EPQVLPASFD ALMHMIHHPL GVWEVPNGMR TETFEAYCRG 300 LVGSTYDVFN AQNAIVQTGH GALTDGEVVA AHTSDATVDE LIRSTTYGIQ PEPQILL

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MSAFPAAEDD SFMFSPSDRR LVDILRAKIG GGDFPNAAYF VDDDVCSVRP EELVRKHSMP  60
ARVRSREAGD GRQFYFFSPE SFVSTRTKKQ RKRTIDRTSG NECWHGEGSG KMVDGTNDGY  120
MTKFSFHIKI AGETVAKPGW LMTEYSLKGT GAGGWVLCKI YKSPRGPGRS KAPSSLENKR  180
KAADDPEDAR PSTKERRQGQ IDANGDLEGD QPVPSGDLPS VNPTVQTVYG ALTDGEVIDA  240
LAGGVTVDEL IPSTTEDRQP EPQVLPASFD ALMHMIHHPL GVWEVPNGMR TETFEAYCRG  300
LVGSTYDVFN AQNAIVQTGH GALTDGEVVA AHTSDATVDE LIRSTTYGIQ PEPQILL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6280	15	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	2e-06	NAC domain containing protein 3