PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00058.1.g02370.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 227aa MW: 24395.5 Da PI: 9.8994 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 90.4 | 1.6e-28 | 25 | 74 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +YkeC++NhAa++Gg+a+DGCgEfmp+ ++ lkCaACgCHR+FHRr + Zjn_sc00058.1.g02370.1.sm.mk 25 KYKECMRNHAAAIGGQAFDGCGEFMPA----DAPDPLKCAACGCHRSFHRRAAV 74 7*************************9....4689****************865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-18 | 25 | 71 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.7E-24 | 25 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.3E-24 | 25 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.151 | 26 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 6.14E-19 | 115 | 188 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-29 | 118 | 189 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.9E-26 | 129 | 186 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MMKHLSLVPY EGGSSGGNSG GGGDKYKECM RNHAAAIGGQ AFDGCGEFMP ADAPDPLKCA 60 ACGCHRSFHR RAAVAGSAFL PSAPVAPPHL ALPYHAVPWN VRAGSETPPR PEDFGGTGGG 120 GSGSGSVGRK RFRTKFTPEQ KERMREFAEQ QGWRINRNDD GALDRFCHEI GVRRQVLKVW 180 MHNHKNHHNH HGQKMMSNSH LVASVPNPAA AGQGTPLLAS QCSRLRS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-23 | 130 | 186 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU973235 | 2e-58 | EU973235.1 Zea mays clone 395249 ZF-HD homeobox protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825199.1 | 5e-80 | zinc-finger homeodomain protein 8-like | ||||
Swissprot | Q7X7N3 | 9e-67 | ZHD8_ORYSJ; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A3L6Q4R3 | 7e-79 | A0A3L6Q4R3_PANMI; Zinc-finger homeodomain protein 8-like | ||||
STRING | OMERI04G10740.1 | 4e-70 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13649 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69600.1 | 2e-43 | zinc finger homeodomain 1 |