PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00057.1.g00250.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 416aa    MW: 43630.9 Da    PI: 7.331
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00057.1.g00250.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001249271123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cg  F +   L  H+r+H
  Zjn_sc00057.1.g00250.1.am.mk 249 HECSICGAEFASGQALGGHMRRH 271
                                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.3E-11136161IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-8136159No hitNo description
PROSITE profilePS5015710.263137164IPR007087Zinc finger, C2H2
SMARTSM003550.11137159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-8244271No hitNo description
PfamPF139121.9E-12248272IPR007087Zinc finger, C2H2
SMARTSM003550.016249271IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429249276IPR007087Zinc finger, C2H2
PROSITE patternPS000280251271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGGVRQEKEA AAPPTALVPA VVVKGKRSKR QRVHAPPLVL TAAAAEWSSS AASATAASAE  60
EDSGTSTPSA DDAASTNGCV TEEEEDMALC LVLLSRGEPA VAKEKVRKEG GEVAVVKEAR  120
FRSRRPADGA GAGEFVYECK TCNKCFPSFQ ALGGHRTSHK KPRLLPPVPP SSSDDKNSPA  180
AVETTTTTTA PSHPPSPPSA PPAAQETPDA TTALLGNLPA VPAAPLPKQE PGATVSATAS  240
SSSRHPRVHE CSICGAEFAS GQALGGHMRR HRPLVPAAAR VDEAPRKERS LLELDLNMPA  300
PCDEAETSVT SPRFVFPVDA KRQQAPPPLF PATAASALPA RLQVGTTWKH TQPQLFNATF  360
GEDPSHTLPH DADHSENPGG REGVWQLVRW GSGQRGNVLT NRDTLSPVAS PDLNRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086454e-52AK108645.1 Oryza sativa Japonica Group cDNA clone:002-148-B03, full insert sequence.
GenBankAL6066034e-52AL606603.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050N09, complete sequence.
GenBankAL6066544e-52AL606654.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18, complete sequence.
GenBankAP0149604e-52AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126124e-52CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCT8336974e-52CT833697.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043G17, full insert sequence.
GenBankCU4057774e-52CU405777.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C113D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975056.31e-100zinc finger protein ZAT5-like
TrEMBLA0A3L6PT031e-103A0A3L6PT03_PANMI; Zinc finger protein ZAT5-like
STRINGPavir.J13454.1.p4e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.15e-15C2H2 family protein