PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00056.1.g04390.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 327aa MW: 33927.9 Da PI: 8.3366

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00056.1.g04390.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	5	26	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F ++ L H+r H Zjn_sc00056.1.g04390.1.sm.mk 5 TCKLCSRRFASPRALAGHMRAH 26 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.02	4	26	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.66	4	27	IPR007087	Zinc finger, C2H2
Pfam	PF13894	1.8E-4	5	26	No hit	No description
SuperFamily	SSF57667	1.13E-6	5	26	No hit	No description
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.13E-6	165	189	No hit	No description
Pfam	PF13912	6.3E-10	169	194	IPR007087	Zinc finger, C2H2
SMART	SM00355	75	170	190	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.642	170	199	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.2E-5	241	255	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MAKNTCKLCS RRFASPRALA GHMRAHSVAA AKSQISSASS ASTSVVAGGD DDGDAKKPVQ 60 GYVLREKPKR RVRLAEPDFS DRESETTGFF PSSPSPTNGH AGSGGDAEPA SSVSDAATPE 120 EDVALSLMML SRDSWPSPPP SLPSYHRDDS DAECGARPAI AVAAQKRTRY ECSACKKAFR 180 SYQALGGHRA SNVRGGKGGC CAPPLHTPPP SPPQPLPAVR DGAEVGSLEA AAAPVPPLLS 240 RFSSGQALGG HRRSHLCSAP VAAEDSPISN PPVAMKSHGF IDLNLPPTLD DVEVSAVSDA 300 RIPSSRRSQV LESKQAGCFA TVASPFG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	72	KPKRRVR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976448.1	8e-95	zinc finger protein ZAT1
TrEMBL	A0A3L6Q711	1e-114	A0A3L6Q711_PANMI; Zinc finger protein ZAT1-like
STRING	OPUNC04G18700.1	1e-102	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3518	33	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	1e-17	C2H2-like zinc finger protein