PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g04190.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 442aa    MW: 48561.4 Da    PI: 12.1073
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g04190.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.3e-12253294346
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   ++++eE    +d+ +++G++ W++Ia  ++ gRt++++k++w +
  Zjn_sc00056.1.g04190.1.am.mk 253 KFSAEEKRVVLDLQAKFGNR-WARIATFLP-GRTDNDVKNFWST 294
                                   79******************.*********.***********65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.796216244IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-7216250IPR009057Homeodomain-like
CDDcd001670.0056218244No hitNo description
SuperFamilySSF466898.53E-18230300IPR009057Homeodomain-like
PROSITE profilePS5129418.597245300IPR017930Myb domain
SMARTSM007171.3E-10250298IPR001005SANT/Myb domain
CDDcd001677.50E-10253292No hitNo description
PfamPF002492.1E-10253293IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-15253294IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MIRASNVVSP FSSGLPPGPT RRTSHAEQPA TTASTADSAP STAETTSQAA LTASRKGHVL  60
TTTGNGPSPS SAPPPLAALV NPQAKHRDHR FTEFRAAAQG RRWASEAPSP PRRRSWGETC  120
GYSRAFVRRS STRPLLPLLQ LANQTSPLDP NPTLRMSPHA LLPPLSGFHK QRAALFLSTS  180
LRELVTARCA AGQWLGHLAA RAVGRAAAGG SPAPAGSRDW SSIRSKGLLP RTGKSCRLRW  240
VNRLRPNLKS DCKFSAEEKR VVLDLQAKFG NRWARIATFL PGRTDNDVKN FWSTRRKRLA  300
RLRRSPHRGR SGKNLSAEKA AASPLASEFP RFHSSAAPPA ANVVQRHRPW TPRMMNWSPT  360
IRWALNICVP GEHCRLRPRY ILRTLCSSSP GIPGSSDTAP GFYAYARAMH DFTSHQELLP  420
FLQPSQMAFP FFDMHDSIKI EP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-1721629826106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630004e-34AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAL7316134e-34AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149604e-34AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126124e-34CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552184e-34CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164543.15e-55myb-related protein Myb4-like
SwissprotQ0JB894e-49MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A1D5URT51e-53A0A1D5URT5_WHEAT; Uncharacterized protein
STRINGTraes_2DL_912473A86.16e-55(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.15e-40MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]