PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g03470.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family YABBY
Protein Properties Length: 287aa    MW: 30829.9 Da    PI: 8.6759
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g03470.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY86.19.7e-27221426121
                         YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl..deslkee.....lleelkvee 79 
                                     eq+Cyv+Cn+C+tilav vP +slfk+v+vrCGhC++llsvnl+     l+a ++l  +++l  +     ll+++    
  Zjn_sc00056.1.g03470.1.sm.mk  22 EQEQLCYVHCNYCDTILAVGVPCSSLFKTVAVRCGHCANLLSVNLRSLL--LPAANQLpfGQALLSPtsphgLLDDMPPFA 100
                                   679***************************************9987654..555554411333333345557999999999 PP

                         YABBY  80 enlksnvekeesastsvsseklsenedeevprvppvirPPek 121
                                     + s  ++e++as +vs+ + s+n+  ++  +  ++ PP k
  Zjn_sc00056.1.g03470.1.sm.mk 101 APTPSLLSAEQAASPTVSTITSSNNSYGNSMSAMSINAPPPK 142
                                   999999999999999999988888888888888889999977 PP
2YABBY1203.6e-3717224594170
                         YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                                   ++ ++++    ++ ++p v+++ r  ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWahfP+ihfgl
  Zjn_sc00056.1.g03470.1.sm.mk 172 QKAQNFT---VDSSQLPTVKHAHRATEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGL 245
                                   3333333...3345567777899****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.2E-6322245IPR006780YABBY protein
SuperFamilySSF470952.36E-7188238IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.3E-4197237IPR009071High mobility group box domain
CDDcd000849.43E-5199235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSSVPETFAT DPHLVQPPAA AEQEQLCYVH CNYCDTILAV GVPCSSLFKT VAVRCGHCAN  60
LLSVNLRSLL LPAANQLPFG QALLSPTSPH GLLDDMPPFA APTPSLLSAE QAASPTVSTI  120
TSSNNSYGNS MSAMSINAPP PKSASPEPQQ QQPKSASSGN RKSFGWSRLK SQKAQNFTVD  180
SSQLPTVKHA HRATEKRQRV PSAYNRFIKD EIQRIKASNP DITHREAFSA AAKNWAHFPH  240
IHFGLMPDQG LKKTSIQNQD GSECMLFKDG LYAAAAAAAS GMSITPY
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698573e-77EU969857.1 Zea mays clone 336518 yabby14 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976365.11e-121protein YABBY 5
SwissprotQ01JG21e-113YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-113YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A0A9NXW51e-122A0A0A9NXW5_ARUDO; ZYB14
STRINGSi010859m1e-120(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-50YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]