PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g03370.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 283aa    MW: 30401.1 Da    PI: 6.5984
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g03370.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W +eEd+llvd+v+  G+g+W++ ++  g++R++k+c++rw +yl
  Zjn_sc00056.1.g03370.1.am.mk 14 KGPWAPEEDKLLVDYVQANGSGNWRLLPKLAGLNRCGKSCRLRWTNYL 61
                                  79********************************************97 PP
2Myb_DNA-binding521.6e-1667112148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++TteE+  +++++   G++ W+ Ia+ ++ gRt++++k++w+++l
  Zjn_sc00056.1.g03370.1.am.mk  67 RGPFTTEEHNTILQLHGIVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 112
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.339961IPR017930Myb domain
SuperFamilySSF466891.12E-3011108IPR009057Homeodomain-like
SMARTSM007176.2E-131363IPR001005SANT/Myb domain
PfamPF002496.3E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-231568IPR009057Homeodomain-like
CDDcd001673.34E-91661No hitNo description
PROSITE profilePS5129426.66962116IPR017930Myb domain
SMARTSM007171.4E-1466114IPR001005SANT/Myb domain
PfamPF002494.6E-1467112IPR001005SANT/Myb domain
CDDcd001675.93E-1069112No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2669116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGRTPCCDGK GVKKGPWAPE EDKLLVDYVQ ANGSGNWRLL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGPF TTEEHNTILQ LHGIVGNKWS MIAAQLPGRT DNEIKNYWNT HLKKQLRQES  120
HGEDALLAAS ASSSAARHMA QWETARLEAE ARLSLLSCST TTTTSATASS SSSAAEHAAG  180
PDIFLRLWNS EVGESFRGAA VHGQGPDPPP QANAIAPPPA PHAHGDESSM TNNGAVSTMA  240
DEYQAFLDLA VEEFALLQGR LGAFAVFPAA DLLAGAALFA PFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008661372.11e-130putative homeodomain-like transcription factor superfamily protein isoform X1
SwissprotQ9M2D91e-80MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A3L6G4I61e-130A0A3L6G4I6_MAIZE; Transcription factor MYB102
STRINGSb06g023620.11e-128(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.15e-71myb domain protein 17