PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g00120.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 567aa    MW: 59386.3 Da    PI: 6.5909
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g00120.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001781102223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                   +Cp C+k+F +   ++ H+r+H
  Zjn_sc00056.1.g00120.1.sm.mk  81 TCPECDKTFLSDKAMHGHLRSH 102
                                   8*******************99 PP
2zf-C2H214.50.0001385407123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C +CgksF+++  L  Hi  H
  Zjn_sc00056.1.g00120.1.sm.mk 385 HECVICGKSFPSHQALGGHIAAH 407
                                   78**************9999877 PP
3zf-C2H212.80.00036511533123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+dC++sF++   L  H r+H
  Zjn_sc00056.1.g00120.1.sm.mk 511 HVCSDCNMSFRSGQALGGHKRKH 533
                                   79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.59880102IPR007087Zinc finger, C2H2
SMARTSM003550.01680102IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.38E-780102No hitNo description
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
PfamPF139121.8E-482104IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-7380407No hitNo description
PfamPF139123.1E-7385408IPR007087Zinc finger, C2H2
SMARTSM003550.052385407IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598385412IPR007087Zinc finger, C2H2
PROSITE patternPS000280387407IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12511533IPR007087Zinc finger, C2H2
PfamPF139127.3E-9511534IPR007087Zinc finger, C2H2
SMARTSM003550.095511533IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280513533IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MDLTTFYAQA TEAAAPSVHA GDEDDLVGLT TDEAALLKLV VQTSGLANGP ASRKGSGLSQ  60
LAVGNADEAG EGRGGGGRDL TCPECDKTFL SDKAMHGHLR SHPDRGYKGA TRPAAMASLT  120
DVAGDKKRTK KRKAPQKEAG ASPATNISDT HAAAGEKKQT DEGELWAKWA VTAKRGRSSS  180
TPSSAGSASA PAAAQSSSWC SEDEEAALIL LEIASGGGPT SETQQSPQPV NTRDAKHQIP  240
EVDEQPMLLG HVAQNQMPEG PEPPQLMTPD HVATCTVMAH QTPDAVQQIV QLELSPEFII  300
VESQMTEVKE LAKQLEIPTK AVVDVVRATD TSANQQPAAP DSSAKKRKKR RLSDSEQTPE  360
TASPESAIVK TPERRIPSPA SDKKHECVIC GKSFPSHQAL GGHIAAHNKS GSKHGARYDD  420
LVVTEAIQKI LANRKKSTKA IIGGCMGAAE ASFAGAGAVG IGVQVQGGPV ACLGHECPVA  480
GGVQEGPVAG AAEERHDVQP PLHVPKSSAQ HVCSDCNMSF RSGQALGGHK RKHWFREKQL  540
ARAALAAASL NFDLNEMPND VDGENQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344348KKRKK
2344350KKRKKRR
3344351KKRKKRRL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-06C2H2 family protein