PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00055.1.g01390.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 295aa    MW: 30893.9 Da    PI: 10.1314
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00055.1.g01390.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017115135121
                                   EEETTTTEEESSHHHHHHHHH CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                                   y+C+ Cgks+     L  H +
  Zjn_sc00055.1.g01390.1.sm.mk 115 YTCKECGKSYAKFRALGGHVS 135
                                   9*********88777766665 PP
2zf-C2H215.16.6e-05174196123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C +Cgk+F     L  H+r H
  Zjn_sc00055.1.g01390.1.sm.mk 174 HVCRKCGKVFAKGTALGGHMRAH 196
                                   79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.9E-5115135IPR007087Zinc finger, C2H2
SMARTSM0035511115137IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.09E-8115137No hitNo description
PROSITE profilePS501579.598115142IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-8169196No hitNo description
Gene3DG3DSA:3.30.160.602.3E-5172198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-7174196IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.466174201IPR007087Zinc finger, C2H2
SMARTSM003550.074174196IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGPSSPPLRR VRPDDDDADE GRFVSDDGGR DLRPQSPTRT WESDRTISDE DDDVSPASVL  60
RTGPMERVMG LDAGWASTGK RGRTERKQAA VAAPATAQLP RPVPPPRDDQ APLKYTCKEC  120
GKSYAKFRAL GGHVSWHRIR EREAAAAAAA AAGTGAQDGG ALARRGRKSE GRKHVCRKCG  180
KVFAKGTALG GHMRAHAGDA TAGPVVPEGN KKRCLEPAAD DVAPPPAPGL ASTVPIVSEG  240
NKKRCLKPAM DNVAAPPTAG VSSAAPIKTE EASSPALVRS GRVLLFGVDI SRPPV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684312.12e-30zinc finger protein GLI4-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18437610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-11zinc-finger protein 2