PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00051.1.g01040.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 278aa    MW: 30334.7 Da    PI: 8.2762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00051.1.g01040.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08153197554
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Zjn_sc00051.1.g01040.1.sm.mk 153 HSIAERLRRERIAERIRLLQELVPNT-----NKTDRAAMLDEILDYVKFL 197
                                   99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-13146203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-13150203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-6153197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAGQQPPGGP EDDFLDHLFA FPSAGAGGGA PGHHPFPLGL SLDAAAAKPV SFLPDMVRVR  60
VRACLRRLTP DASLTEGVGV LLQDRDPVQL AGLFPPAFTG AGGMQPMSLR PAPPHQVFHA  120
PPKPGEGAVA QQPQTPAPRP KVRARRGQAT DPHSIAERLR RERIAERIRL LQELVPNTNK  180
TDRAAMLDEI LDYVKFLRLQ VKDEASNGGS TQHIWEKWST DGTEKEVAKL MEEDIRAAMQ  240
FLRSKALCMM PISLAMAIYD RQHPQEGNSF KPEPNTSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804227.11e-115transcription factor UNE12
SwissprotO227687e-52UNE12_ARATH; Transcription factor UNE12
SwissprotQ93Y006e-52BH007_ARATH; Transcription factor bHLH7
TrEMBLA0A2S3GW171e-113A0A2S3GW17_9POAL; Uncharacterized protein
STRINGPavir.J03221.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.36e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]