PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00050.1.g01030.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 236aa MW: 26076.1 Da PI: 10.2065 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 162 | 209 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l++ + G +W+++++ g+ R++k+c++rw +yl Zjn_sc00050.1.g01030.1.am.mk 162 RGPWTAEEDRKLINFILTNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 209 89******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-21 | 153 | 211 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.461 | 157 | 213 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-12 | 161 | 211 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 162 | 209 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.52E-18 | 163 | 236 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.49E-10 | 164 | 209 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-5 | 212 | 236 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MEPGGVHPHE EFRYGRKKTV DGMKNVTECP CFFTSSFTAI AQIHAQSPVG DEAKYQGHAN 60 VWPMILRWSA AEVSPSMHWR MEPAGAALSQ SSKPRARAGL VPALLACPRA AAFLTGARRA 120 LAGRCCSRLH AWPAGTRSSS STHRGGFGMG RQPCCDKLEV KRGPWTAEED RKLINFILTN 180 GHCCWRAVPK LAGLLRCGKS CRLRWTNYLR PDLKRGLLTE AEEQVVTDLH AKLGNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-13 | 159 | 236 | 1 | 77 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-13 | 159 | 236 | 24 | 100 | MYB TRANSFORMING PROTEIN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041771 | 1e-104 | BT041771.1 Zea mays full-length cDNA clone ZM_BFb0051B11 mRNA, complete cds. | |||
GenBank | BT062437 | 1e-104 | BT062437.1 Zea mays full-length cDNA clone ZM_BFb0298A24 mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP65446 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12350.1 | 1e-54 | myb domain protein 42 |