PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00047.1.g01590.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 269aa MW: 30142.5 Da PI: 9.3508

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00047.1.g01590.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.3	4.4e-12	157	182	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y + +C+++ +tG+C yGd+CkF+H+ Zjn_sc00047.1.g01590.1.sm.mkhc 157 YQHDICKDYKETGYCGYGDSCKFMHD 182 67899********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.96E-9	154	187	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.399	156	184	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.2E-7	156	183	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.4E-10	157	182	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-11	157	187	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MLARITNALP ALLRPAPCCA HRLRRRGRRR RRHRGPALEE GAVGSRKARI LLHRRIRGAA 60 SVPIRVVPDD PGLHGQPRHR HPRDGDGLTQ AEETLKKNPS ASSSASGSGE VYKGIHGYTE 120 YKAGFRREHT VSSEKAGSSH GPLRASAHIR VSARFDYQHD ICKDYKETGY CGYGDSCKFM 180 HDRGDYKSGW QLEKEYDEAE KARKRRIAMG GGDGSDDEAA EDDDDDDDEE AHHSKNKKCF 240 VCNKPTLGIF NAAQEIRWKM AQDKQQQDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	3e-29	110	269	151	326	RING finger protein 113A
5z58_M	3e-29	110	269	151	326	RING finger protein 113A
6ff4_t	3e-29	110	269	151	326	RING finger protein 113A
6ff7_t	3e-29	110	269	151	326	RING finger protein 113A
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	33	RRRGRRRRRHR
2	24	31	RRGRRRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156391.1	8e-96	zinc finger CCCH domain-containing protein 15
Swissprot	Q6K4V3	3e-81	C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBL	A0A3B6JMH3	2e-94	A0A3B6JMH3_WHEAT; Uncharacterized protein
TrEMBL	A0A453IHI9	2e-94	A0A453IHI9_AEGTS; Uncharacterized protein
TrEMBL	R7W9H9	2e-93	R7W9H9_AEGTA; Zinc finger CCCH domain-containing protein 15
STRING	EMT14529	3e-94	(Aegilops tauschii)
STRING	Traes_4DL_4C78C56A4.1	9e-95	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8071	36	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	4e-70	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]