PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00047.1.g00560.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 359aa    MW: 38057 Da    PI: 10.8645
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00047.1.g00560.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05165184221
                                   EETTTTEEESSHHHHHHHHH CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                                   +C+ Cgk+F+++  L  H+r
  Zjn_sc00047.1.g00560.1.am.mk 165 PCTECGKRFPSWKALFGHMR 184
                                   5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0034164186IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619164191IPR007087Zinc finger, C2H2
SuperFamilySSF576675.18E-9165186No hitNo description
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-4166186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.4E-9166188IPR007087Zinc finger, C2H2
SuperFamilySSF576675.18E-9266293No hitNo description
PROSITE profilePS501579.39271293IPR007087Zinc finger, C2H2
SMARTSM003550.58271293IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-11271295IPR007087Zinc finger, C2H2
PROSITE patternPS000280273293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MISVDRLRNM QRDGERRRYV GQLLDSSGKQ LTARVLSTQA HAPARAACRR STHPRQPPRH  60
DGPSAVHIRA STTTYHLRPA TSTAPRRAAA SRNLSREAMA AYSLFHPPLQ PRAAPPPPPP  120
PPPPPPPPLP TFHDTTLTLA LALPLPRPVA WALPVRSSPN GDTPPCTECG KRFPSWKALF  180
GHMRCHPERQ WRGITPPPHF RVQGSTAADQ FTAQEREVAT SLLMLSGAGT GKKSLLGSPR  240
GRKESAAGTS ASSSSTTAPA AASSKCDADD HKCSVCHKGF ATGQALGGHK RCHWEGASGE  300
AVVTATSSNC SVLATSQEAT AATATALDLN LAPPGTPSPR TTNDQGRSLN AVLDLKLGY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751885e-39EU975188.1 Zea mays clone 483820 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682354.14e-77zinc finger protein ZAT3
TrEMBLK3XRW11e-76K3XRW1_SETIT; Uncharacterized protein
STRINGSi004657m2e-77(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-30C2H2-like zinc finger protein