PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00046.1.g00090.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 410aa MW: 45110.2 Da PI: 10.9665

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00046.1.g00090.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.7	3.1e-41	137	236	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC+++Cv+apyfp ++p+kfa vh++FGasnv kll++lp+ +reda++sl+yeA+ar+rdPvyG+v+ i+ Zjn_sc00046.1.g00090.1.am.mk 137 PCAACKLLRRKCTQGCVFAPYFPPDNPAKFASVHRVFGASNVFKLLNKLPHAQREDAVNSLAYEADARLRDPVYGCVSYIS 217 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lq +++q++ ela++++e Zjn_sc00046.1.g00090.1.am.mk 218 VLQLRIKQARDELAAARKE 236 ************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.323	136	237	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-41	137	234	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MGRGDPAVRL VRPNLVAPSW SRGPFLIAGT ERNPKYIQPP RLNAPDRLAS SIKERTPRRL 60 HPDHALSPPL PARLLPTHCL SSARRSAESI RIFLPFFPGF VASWLQLRRP SVIRQNRHIR 120 RRRRRRMSSS SSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DNPAKFASVH RVFGASNVFK 180 LLNKLPHAQR EDAVNSLAYE ADARLRDPVY GCVSYISVLQ LRIKQARDEL AAARKELAAY 240 IGPAAYAPFA PAPTQYHHHA HATASPQNAQ GHGQQQQMIA QQHQHLLHHQ QLAEAQQLAA 300 AVEVAREQDF MMRQAAPQAA AYAHTVPGSN AGPTVAVVPP DESRTSRYER GFLFQQQQQP 360 PSQAQTAVAL TYQMAWSPPP SSSSQPPAVA SHQQQAEGSY EGGGGVVPPA

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MGRGDPAVRL VRPNLVAPSW SRGPFLIAGT ERNPKYIQPP RLNAPDRLAS SIKERTPRRL  60
HPDHALSPPL PARLLPTHCL SSARRSAESI RIFLPFFPGF VASWLQLRRP SVIRQNRHIR  120
RRRRRRMSSS SSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DNPAKFASVH RVFGASNVFK  180
LLNKLPHAQR EDAVNSLAYE ADARLRDPVY GCVSYISVLQ LRIKQARDEL AAARKELAAY  240
IGPAAYAPFA PAPTQYHHHA HATASPQNAQ GHGQQQQMIA QQHQHLLHHQ QLAEAQQLAA  300
AVEVAREQDF MMRQAAPQAA AYAHTVPGSN AGPTVAVVPP DESRTSRYER GFLFQQQQQP  360
PSQAQTAVAL TYQMAWSPPP SSSSQPPAVA SHQQQAEGSY EGGGGVVPPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-45	130	240	4	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-45	130	240	4	114	LOB family transfactor Ramosa2.1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	125	RQNRHIRRRRRRR
2	116	125	RHIRRRRRRR
3	119	125	RRRRRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012704292.1	1e-103	LOB domain-containing protein 6
TrEMBL	A0A1E5VYJ4	1e-106	A0A1E5VYJ4_9POAL; LOB domain-containing protein 36
STRING	Si036905m	1e-102	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6143	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-47	ASYMMETRIC LEAVES 2-like 1