PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00044.1.g04960.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 389aa MW: 42347.3 Da PI: 6.4012 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.4 | 4.8e-52 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+ +yL++++++ ++++ +i++vdiyk++PwdLp k+ ++ ewyfFs+rd+ky++g r+nra+ sg Zjn_sc00044.1.g04960.1.sm.mk 15 LPPGFRFHPTDEELILHYLRNRAASVPCPV-PIIADVDIYKFDPWDLPCKAVYGDGEWYFFSPRDRKYPNGIRPNRAAGSG 94 79****************************.88***************66666789************************* PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+dk+++++ +ge vg+kk Lvfykgr pkg+kt+W+mheyrl Zjn_sc00044.1.g04960.1.sm.mk 95 YWKATGTDKPIHDSaTGESVGVKKALVFYKGRPPKGTKTSWIMHEYRL 142 ************9988999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-64 | 5 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.377 | 15 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-27 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MEETMVSTQA AAPLLPPGFR FHPTDEELIL HYLRNRAASV PCPVPIIADV DIYKFDPWDL 60 PCKAVYGDGE WYFFSPRDRK YPNGIRPNRA AGSGYWKATG TDKPIHDSAT GESVGVKKAL 120 VFYKGRPPKG TKTSWIMHEY RLAAGYPLAA AAAYRPPVKF RNASMRLDDW VLCRIYRKSD 180 QASPTAPPIA DYDSHLLDHD ELSSGGLYVD DICSSFYGPT SGGGTTPSFG TMNATTHHHQ 240 QQDTPARHPT IASFPEFFDD YSLAHMFDSA VPSDGDQQHA AFAMHPSLNQ LLAVGDSAQY 300 SSESSDLIYS SDYPGAAGAL GGVAKRKVMM SQQLDDDCVV DAGNPPAKKL HLSCFDAPQT 360 ATGGVLSATS SHSRVLSGLT NHNNILPQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-70 | 1 | 183 | 6 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-70 | 1 | 183 | 6 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-70 | 1 | 183 | 6 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-70 | 1 | 183 | 6 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-70 | 1 | 183 | 9 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-70 | 1 | 183 | 9 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-70 | 1 | 183 | 9 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-70 | 1 | 183 | 9 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-70 | 1 | 183 | 9 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-70 | 1 | 183 | 9 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-70 | 1 | 183 | 9 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-70 | 1 | 183 | 9 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-70 | 1 | 183 | 6 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-70 | 1 | 183 | 6 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067914 | 1e-175 | BT067914.2 Zea mays full-length cDNA clone ZM_BFc0188L19 mRNA, complete cds. | |||
GenBank | EU971399 | 1e-175 | EU971399.1 Zea mays clone 363807 NAC domain transcription factor mRNA, complete cds. | |||
GenBank | KP297932 | 1e-175 | KP297932.1 Zea mays Zma1158 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800259.1 | 1e-144 | NAC domain-containing protein 48-like | ||||
TrEMBL | A0A1E5V1K6 | 1e-147 | A0A1E5V1K6_9POAL; NAC transcription factor 29 | ||||
STRING | Traes_2BS_C116E5668.1 | 1e-144 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 2e-78 | NAC-like, activated by AP3/PI |