PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00043.1.g05070.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 184aa    MW: 19942.7 Da    PI: 9.1292
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00043.1.g05070.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.86.1e-3261061100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvi 80 
                                   aCa+Ck++rrkC+++C la yfpa+++k+f+++h +FG++n++kl+ka  +e  r++a+++l++eA +r rdP +G+++ +
  Zjn_sc00043.1.g05070.1.sm.mk   6 ACAVCKHQRRKCEPNCELAAYFPANRMKDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEAGWRERDPSEGCYREV 86 
                                   7**********************************************9977766*************************** PP

                        DUF260  81 lklqqqleqlkaelallkee 100
                                     l+++ + l+ae a+l+++
  Zjn_sc00043.1.g05070.1.sm.mk  87 AGLRRENALLRAENAALRRQ 106
                                   *************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.3365107IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-296103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MTGVGACAVC KHQRRKCEPN CELAAYFPAN RMKDFRALHL VFGVANLTKL IKANATEAAR  60
RRAAETLTWE AGWRERDPSE GCYREVAGLR RENALLRAEN AALRRQCAAA FSAYGGGASV  120
ANSNVVGGCY NSNGAAQTMF VGYAQDDRGY LCPAADVRNG VGMERSDAAI TMIMGDKNNK  180
ILKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-162996103LOB family transfactor Ramosa2.1
5ly0_B8e-162996103LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087241e-107AK108724.1 Oryza sativa Japonica Group cDNA clone:002-150-C08, full insert sequence.
GenBankAP0032011e-107AP003201.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1066G12.
GenBankAP0149571e-107AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-107CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankHG6703061e-107HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314390.13e-63LOB domain-containing protein 7
TrEMBLA0A1E5VAI47e-61A0A1E5VAI4_9POAL; Uncharacterized protein
TrEMBLI1HDS97e-62I1HDS9_BRADI; Uncharacterized protein
STRINGBRADI2G08480.11e-62(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.15e-17LOB domain-containing protein 2