PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00043.1.g04860.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 686aa    MW: 74300 Da    PI: 8.7951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00043.1.g04860.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12536582455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Zjn_sc00043.1.g04860.1.am.mkhc 536 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 582
                                     799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-49131316IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831532581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-18535597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.82E-15535586No hitNo description
PfamPF000104.3E-10536582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-18536594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16538587IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
RAPEIHSRIR EPPAPSALIP CIRRHPRTHG VLSPCPGARL HTAGRDLATR LALDSAAPAS  60
IRAQGPQSGI MVMKMEIEDD AAIGGGTGGI WTEEDRALGA AVLGADAFSY LTKGGGAISQ  120
GLVSASLSVD MQNKLQELVE SDRPGAGWNY AIYWQLSRTK SGDFVLGWGD GSCREPCDGE  180
VGAAASAGND DTKQRMRKRV LQRLHIAFGG VDEEDYALGI DQVTDTEMFF LASMYFAFPR  240
RTGGPGQVFA AGIPLWIPNS ERKVYPTNYC YRGFLADAAG FRTIVLVPFE GGVLELGSMQ  300
HIAESSDAIQ NIRSVFSGTS NNKAAAQKPE GNGPAATERS PSLAKIFGKD LNLGRPSAGP  360
VAGVSKVDER SWEQRSAAGG GSLLPNVQKG LQNFTWSQAR GLNSHQQKFG NGVLIVSNEA  420
AQRSNGATDN SSATQFQLQK VLPPQKLQLQ KLPQIQKTPP MVNQQQLQPQ APRQIDFSTG  480
SSSKAGVLVT RTSGLDGESA EVDGLCKEEG PAPAVEDRRP RKRGRKPANG REEPLNHVEA  540
ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITYITD LQKKLKEMET ERERFLESGL  600
VGGMPRPEVD IQVVQDEVLV RVMSPMENHP VKRVFQAFED AEVRIGESKV TGNNGMVVHS  660
FTIKCPGSEQ QTREKVIAAM SRAMNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-28530592264Transcription factor MYC2
5gnj_B7e-28530592264Transcription factor MYC2
5gnj_E7e-28530592264Transcription factor MYC2
5gnj_F7e-28530592264Transcription factor MYC2
5gnj_G7e-28530592264Transcription factor MYC2
5gnj_I7e-28530592264Transcription factor MYC2
5gnj_M7e-28530592264Transcription factor MYC2
5gnj_N7e-28530592264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1517525RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816895.10.0transcription factor bHLH13-like
TrEMBLA0A3L6SNM90.0A0A3L6SNM9_PANMI; Transcription factor bHLH13-like
STRINGPavir.Ea00030.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-68bHLH family protein