PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00041.1.g01920.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 193aa    MW: 21545.5 Da    PI: 9.7555
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00041.1.g01920.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.4e-066183123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C+k F r  nL+ H r H
  Zjn_sc00041.1.g01920.1.sm.mk 61 FVCEVCNKGFQREQNLQLHRRGH 83
                                  89*******************88 PP
2zf-C2H2157e-05137159123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H +t+
  Zjn_sc00041.1.g01920.1.sm.mk 137 WKCDKCNKRYAVQSDWKAHSKTC 159
                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-66083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.11E-86083No hitNo description
SMARTSM003550.00416183IPR015880Zinc finger, C2H2-like
PfamPF121719.3E-66183IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.0946183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355300102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.3E-6125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.11E-8132157No hitNo description
SMARTSM00355110137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAAASSAAFF GLGDTQMEPQ AAASSLQQQQ NSAAAPGAAA GDPDAEVIAL SPRTLLATNR  60
FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNPKEARRK VYLCPEPTCV HHDPSRALGD  120
LTGIKKHYCR KHGEKKWKCD KCNKRYAVQS DWKAHSKTCG TREYRCDCGT LFSRSTPFSF  180
LHANFLDRSP SIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-23133187356Zinc finger protein JACKDAW
5b3h_F2e-23133187356Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548651e-178AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462813.11e-109protein indeterminate-domain 5, chloroplastic
RefseqXP_021309955.11e-109protein indeterminate-domain 5, chloroplastic
SwissprotQ8GYC11e-92IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLC5X7R91e-108C5X7R9_SORBI; Uncharacterized protein
STRINGSb02g032400.11e-108(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.12e-88indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]