PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00041.1.g01760.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 731aa MW: 78405.8 Da PI: 9.9691

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00041.1.g01760.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.2	3.9e-12	425	524	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikege 68 +W+++ + L+ea++ ++ +r+klk +W ++++ + + ++p+qCk+k+e+++kry+++ + Zjn_sc00041.1.g01760.1.am.mk 425 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWIDIASEVsaycaedtaatgkPGGNSAKTPNQCKNKIESMKKRYRAESAAV 505 5****************************99999999999***966666799*************998766 PP trihelix 69 kkr.tsessstcpyfdqle 86 + + + ++++f +++ Zjn_sc00041.1.g01760.1.am.mk 506 ARAgPAAAGPSWRFFARMD 524 66536778889***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.6E-13	423	525	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MEELDCMTWV PLSLDLSTFL ILSFAQLRSS KFRCHSSSTS GNNLSWFAGT CVGFTSVGTS 60 KSDRIAYTAT FLIEQDAFLP VLPQMVTVNR CSRDPRTFRG VISMPAGDGE KDAGCHQPRA 120 SGSRKRGGAV GGQASALAWV SRRVRSPPTA GGPAPAARGC CSACRGKRGP SAGAWEGSTP 180 PTDSLRGSRT TVHRAAGRAR RQEPAADSRE RQEPAADSRE TEEFVSLRGR KDGRVPNRCG 240 LLPRWCHAPL DFPTPPGAVP NLMRPDARLH SPTLPPALAT TRAHPVHAAR VAGLRGRADY 300 SWLAPARRGQ LEHAGGGSGT GTGGAPGSSL PPTLRRSGLP SPHHLVLPSV RSRSAQPLLA 360 LSLFSRPRLL LTPLARRPLS FAVLRSLPSP AAEFDHFLGS GSMDGLAPDA DAAPLAAAPP 420 QKRDEWSESG IVRLLEAYEA KWLLRNRAKL KWSDWIDIAS EVSAYCAEDT AATGKPGGNS 480 AKTPNQCKNK IESMKKRYRA ESAAVARAGP AAAGPSWRFF ARMDGLLKGP AGCSGQAQQV 540 ELGNSIDLQA PAKAEVEAEP CFSAQLPDPG PGAFADLMNI DANGSVPEKA DKADNSVHKE 600 IRTADSDANV SSPRSKVANE DADEEDKLWD MPKKRKSTEF AIAKSIELLA SSFLKVEHAR 660 MEMYRETERM RIEAEIKKGE MELKRTEIMA KTHLQIAKLF AKRLKEGGGR TGGSSSVTAE 720 VDTLTKKGEN D

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MEELDCMTWV PLSLDLSTFL ILSFAQLRSS KFRCHSSSTS GNNLSWFAGT CVGFTSVGTS  60
KSDRIAYTAT FLIEQDAFLP VLPQMVTVNR CSRDPRTFRG VISMPAGDGE KDAGCHQPRA  120
SGSRKRGGAV GGQASALAWV SRRVRSPPTA GGPAPAARGC CSACRGKRGP SAGAWEGSTP  180
PTDSLRGSRT TVHRAAGRAR RQEPAADSRE RQEPAADSRE TEEFVSLRGR KDGRVPNRCG  240
LLPRWCHAPL DFPTPPGAVP NLMRPDARLH SPTLPPALAT TRAHPVHAAR VAGLRGRADY  300
SWLAPARRGQ LEHAGGGSGT GTGGAPGSSL PPTLRRSGLP SPHHLVLPSV RSRSAQPLLA  360
LSLFSRPRLL LTPLARRPLS FAVLRSLPSP AAEFDHFLGS GSMDGLAPDA DAAPLAAAPP  420
QKRDEWSESG IVRLLEAYEA KWLLRNRAKL KWSDWIDIAS EVSAYCAEDT AATGKPGGNS  480
AKTPNQCKNK IESMKKRYRA ESAAVARAGP AAAGPSWRFF ARMDGLLKGP AGCSGQAQQV  540
ELGNSIDLQA PAKAEVEAEP CFSAQLPDPG PGAFADLMNI DANGSVPEKA DKADNSVHKE  600
IRTADSDANV SSPRSKVANE DADEEDKLWD MPKKRKSTEF AIAKSIELLA SSFLKVEHAR  660
MEMYRETERM RIEAEIKKGE MELKRTEIMA KTHLQIAKLF AKRLKEGGGR TGGSSSVTAE  720
VDTLTKKGEN D

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137592	1e-101	AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence.
GenBank	AK068834	1e-101	AK068834.1 Oryza sativa Japonica Group cDNA clone:J013159M18, full insert sequence.
GenBank	AK103673	1e-101	AK103673.1 Oryza sativa Japonica Group cDNA clone:J033136A07, full insert sequence.
GenBank	AP005090	1e-101	AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04.
GenBank	AP014965	1e-101	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	2e-31	sequence-specific DNA binding transcription factors