PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00041.1.g01630.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 64aa    MW: 7544.93 Da    PI: 10.0928
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00041.1.g01630.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00121334323
                                  ETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                                  C +C++ F +   L++H++  H
  Zjn_sc00041.1.g01630.1.sm.mk 13 CYYCDREFDDEKILVQHQKAkH 34
                                  99****************9888 PP
2zf-C2H215.35.7e-053558123
                                  EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                                  +kC+ C+k  s+ s +  H    H
  Zjn_sc00041.1.g01630.1.sm.mk 35 FKCHVCHKKLSTASGMAIHVLQvH 58
                                  89*****************87666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080810.862664IPR003656Zinc finger, BED-type
SMARTSM003552.81134IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.43E-61160No hitNo description
PROSITE patternPS0002801334IPR007087Zinc finger, C2H2
SMARTSM003550.13558IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803758IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MGKKKKRVDK VFCYYCDREF DDEKILVQHQ KAKHFKCHVC HKKLSTASGM AIHVLQVHKE  60
SVTK
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053962e-80AP005396.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0635G10.
GenBankAP0149652e-80AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136975.13e-42uncharacterized protein LOC100217135
SwissprotQ9C5G05e-38SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLA0A1D6EVF19e-41A0A1D6EVF1_MAIZE; Protein SUPPRESSOR OF FRI 4
TrEMBLA0A1D6EVF51e-40A0A1D6EVF5_MAIZE; Protein SUPPRESSOR OF FRI 4
TrEMBLA0A1D6EVG02e-41A0A1D6EVG0_MAIZE; Protein SUPPRESSOR OF FRI 4
TrEMBLA0A1D6EVG11e-41A0A1D6EVG1_MAIZE; Protein SUPPRESSOR OF FRI 4
TrEMBLA0A3L6G3C12e-40A0A3L6G3C1_MAIZE; Protein SUPPRESSOR OF FRI 4
TrEMBLB4FLK48e-41B4FLK4_MAIZE; Protein SUPPRESSOR OF FRI 4
STRINGGRMZM2G081812_P011e-41(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63551318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.12e-40C2H2 family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]
  2. Resentini F, et al.
    SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression.
    Plant Physiol., 2017. 173(1): p. 155-166
    [PMID:27920160]