PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00040.1.g05620.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 436aa    MW: 47345.2 Da    PI: 10.1808
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00040.1.g05620.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.8e-093985347
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                                  +WTteE + + ++ ++   +   +W+++a++++  +t  ++ ++++++
  Zjn_sc00040.1.g05620.1.am.mk 39 AWTTEENKVFEKVLALIDRNapdRWEKVASMLP-SKTVADVMNHYNDL 85
                                  8*****************99*************.***********986 PP
2Myb_DNA-binding414.6e-13144188347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT++E++l++++ +++G g W+ Ia  + ++Rt+ q+ s+ qky
  Zjn_sc00040.1.g05620.1.am.mk 144 PWTEDEHKLFLQGLRKYGRGYWRNIALNFVTTRTPTQVASHAQKY 188
                                   8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.333589IPR017884SANT domain
SMARTSM007171.6E-73688IPR001005SANT/Myb domain
SuperFamilySSF466892.01E-103892IPR009057Homeodomain-like
PfamPF002491.1E-63985IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-53984IPR009057Homeodomain-like
CDDcd001671.58E-63985No hitNo description
PROSITE profilePS5129418.736137193IPR017930Myb domain
SuperFamilySSF466894.38E-16139194IPR009057Homeodomain-like
SMARTSM007171.7E-10141191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-10141187IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-16141191IPR006447Myb domain, plants
PfamPF002492.6E-11144188IPR001005SANT/Myb domain
CDDcd001672.51E-9144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MMAETWTQML LPTTGPWFFG QSCCPWPDRH AGGGIGGDAW TTEENKVFEK VLALIDRNAP  60
DRWEKVASML PSKTVADVMN HYNDLENDVG FIEAGLVSFP HYSSSPPSSG FTLDHWDGSD  120
GGFRRGCGLK RGRGPGQERR KGVPWTEDEH KLFLQGLRKY GRGYWRNIAL NFVTTRTPTQ  180
VASHAQKYFI RLQSGGKDKR RPSIHDTTTA NLSLPNDDHG NISPSPSSAL NTASNPTGGA  240
DQFGALTDVK PFIPPFPGVA HPYANVKLGH KSSLVSGLGF DDSEPSGCMR IGGLAVDSVS  300
PLHLFRVEAP GDEVRHGRSR QQTSRQLALR VACVADRIWS RCCRSLMSRS GWGRRGQALL  360
PARSRQHRVV EQGRHDEVGS SRQRRSAVAA RLASGLGGGG AVGRGLAGRA SGGVGCWRRS  420
VVGEWRLGAL EATETG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1337105876RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815076.11e-142transcription factor DIVARICATA-like isoform X1
TrEMBLA0A2T7DED31e-141A0A2T7DED3_9POAL; Uncharacterized protein
STRINGPavir.J16113.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-67Homeodomain-like transcriptional regulator