PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00038.1.g03460.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 309aa    MW: 36036.6 Da    PI: 7.4246
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00038.1.g03460.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.1e-1728117199
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                   ffk +     +++g +++p kf++++++ + e   + l+ +sg++W++ l  +k++++ +l +GW +F ka++L+e+D +v
  Zjn_sc00038.1.g03460.1.sm.mk  28 FFKLM--TGDFAKG-ISIPEKFVRNFKITE-E--AVDLKVTSGETWRIIL--EKRDNELYLMSGWMDFSKAQELRENDLLV 100
                                   55555..4445555.9*******8887664.4..599999**********..***************************** PP

                                   EEE-SS.SEE..EEEEE-S CS
                            B3  82 Fkldgr.sefelvvkvfrk 99 
                                   F+ +++ s+f   v+vf++
  Zjn_sc00038.1.g03460.1.sm.mk 101 FTCSNErSSF--DVQVFEE 117
                                   **88655777..9998875 PP
2B337.25.2e-122182991799
                                   E--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
                            B3  17 vlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                                   ++p   a++h   +++s++++l+ ++  +sW+v++ y  +s r++      +Fv++n+L+egD+++F+l++  ++ ++ v+
  Zjn_sc00038.1.g03460.1.sm.mk 218 TIPSGLAADHL--EARSQDIILRRPNRkESWTVRY-YYTSSHRCIQNLQFFNFVRENKLREGDVCLFELVKGaRRVTMSVH 295
                                   79999999995..457889*****55549******.777777777777799*****************9977799999999 PP

                                   EE-S CS
                            B3  96 vfrk 99 
                                   v+r+
  Zjn_sc00038.1.g03460.1.sm.mk 296 VVRR 299
                                   9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-1721120IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1725120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.50625118IPR003340B3 DNA binding domain
CDDcd100175.30E-1827115No hitNo description
PfamPF023623.6E-1328116IPR003340B3 DNA binding domain
SMARTSM010191.5E-1128118IPR003340B3 DNA binding domain
PROSITE profilePS5086310.419202300IPR003340B3 DNA binding domain
SMARTSM010190.02206300IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-14215300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-12217299IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-10218295No hitNo description
PfamPF023623.9E-10218299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVEKGCERCR EWQEHYYRKH MDVSKMSFFK LMTGDFAKGI SIPEKFVRNF KITEEAVDLK  60
VTSGETWRII LEKRDNELYL MSGWMDFSKA QELRENDLLV FTCSNERSSF DVQVFEESGC  120
VKTPSLFGPN MCRHFSETAG RRAEHYSLSD SDDTTMPSQL VGCPRDACTS KKRGREPDSP  180
NSSSCHVKEE ESDDMYADSK YYYSRFANQL TNDEKEETIP SGLAADHLEA RSQDIILRRP  240
NRKESWTVRY YYTSSHRCIQ NLQFFNFVRE NKLREGDVCL FELVKGARRV TMSVHVVRRK  300
VQGRFALVG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808343.11e-126B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-105Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2T7EIP51e-126A0A2T7EIP5_9POAL; Uncharacterized protein
STRINGSi024966m1e-124(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-17B3 family protein