PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00038.1.g03420.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 430aa MW: 45466.8 Da PI: 10.7072

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00038.1.g03420.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.5	8.3e-35	242	296	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s++tkfCyynny+++qPr+fC+aCrryWt GG+lrnvPvGg++rk+ + Zjn_sc00038.1.g03420.1.am.mk 242 EQCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSLRNVPVGGSTRKRPR 296 68*************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	27.615	242	296	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-30	242	294	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-21	243	289	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	244	280	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MHARRIAFEL LQQSTSGLSG LSLKATKELA AGRALHAERI SPAGRPASVR PRRRMEILSL 60 SGGAPATRYA PIPAAERGSF DPSRIVFGVT TRRSRQLFVS STYTRKQRNV PSTSSDWSRP 120 CLSLLSPALY LPPPYESTGC RADEQSLSRE RDKHSIANPK SELLTQEPTT SAMEAPLYHL 180 PVPIPAPGVP ALPATLRQND ATIGAVIHQQ QQQAAAVSAV ITAQKKPPPP PPPPTVMATG 240 REQCPRCASR DTKFCYYNNY NTAQPRHFCR ACRRYWTLGG SLRNVPVGGS TRKRPRPARP 300 TRALAAAVAT MSSSGTTTTT TTAAAPSCSG PGIFGGSPVP APAQNGSLLS SLLVGSTGAS 360 DLFAYPAFSA GQLLWPATVL DGDRPETTSK AGGAFPLPFP PADALWQELA AAMPSAAGAG 420 APQPQPQLLL

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MHARRIAFEL LQQSTSGLSG LSLKATKELA AGRALHAERI SPAGRPASVR PRRRMEILSL  60
SGGAPATRYA PIPAAERGSF DPSRIVFGVT TRRSRQLFVS STYTRKQRNV PSTSSDWSRP  120
CLSLLSPALY LPPPYESTGC RADEQSLSRE RDKHSIANPK SELLTQEPTT SAMEAPLYHL  180
PVPIPAPGVP ALPATLRQND ATIGAVIHQQ QQQAAAVSAV ITAQKKPPPP PPPPTVMATG  240
REQCPRCASR DTKFCYYNNY NTAQPRHFCR ACRRYWTLGG SLRNVPVGGS TRKRPRPARP  300
TRALAAAVAT MSSSGTTTTT TTAAAPSCSG PGIFGGSPVP APAQNGSLLS SLLVGSTGAS  360
DLFAYPAFSA GQLLWPATVL DGDRPETTSK AGGAFPLPFP PADALWQELA AAMPSAAGAG  420
APQPQPQLLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	292	296	KRPRP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY661659	2e-63	AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
GenBank	HQ540084	2e-63	HQ540084.1 Sorghum bicolor clone SbDof1 Dof-type zinc finger protein gene, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	9e-24	DOF zinc finger protein 1