PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00037.1.g03420.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 430aa MW: 45909.7 Da PI: 6.5815

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00037.1.g03420.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.5	1.1e-16	258	309	4	58
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +kr rr+++NRe+ArrsR+RK+a + Le+ v++L++eN +L k +l++ ++ Zjn_sc00037.1.g03420.1.am.mkhc 258 VKRMRRMESNRESARRSRKRKQAHLTGLETQVDQLQGENASLFK---QLTDANQQ 309 69**************************************9995...55555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-16	255	319	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.093	257	309	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-14	258	306	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.56E-13	258	310	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-13	259	309	No hit	No description
CDD	cd14702	1.11E-21	260	310	No hit	No description
PROSITE pattern	PS00036	0	262	277	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MAFVLGCWRS IPVHRVLFHP LQPTQTALVA LPLWRSPAVP QHRGKLVDSS QEQARERGQY 60 AFHAGLRCGQ PPSSLLPLLS PPIAEKTFLF FPGSSASSLK ALLHADAART IALQITVKER 120 EVLAVRSTYA QMKKCPSELE LEAFIGGVES DAEQKPGHVA QFGDGVIFQA GGGDLSPFSF 180 ADSNTLNGTI PNHLWSHISM TIESQSSICA AASPASATNL NVKESQTLGG SSGSDSDSDS 240 LFDIEGGLCE QSTNKLNVKR MRRMESNRES ARRSRKRKQA HLTGLETQVD QLQGENASLF 300 KQLTDANQQF TASVTDNRIL KSNVEALRAK VKLAEDMVAR GAVSCGLGHL GLSPALNPPD 360 VLSGLEFPGD DACFTSLSPT EQVLNSPLQS IASLESIDNR VASEVTSCGG GGAGVDVWGW 420 DSHPNGGLSK

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MAFVLGCWRS IPVHRVLFHP LQPTQTALVA LPLWRSPAVP QHRGKLVDSS QEQARERGQY  60
AFHAGLRCGQ PPSSLLPLLS PPIAEKTFLF FPGSSASSLK ALLHADAART IALQITVKER  120
EVLAVRSTYA QMKKCPSELE LEAFIGGVES DAEQKPGHVA QFGDGVIFQA GGGDLSPFSF  180
ADSNTLNGTI PNHLWSHISM TIESQSSICA AASPASATNL NVKESQTLGG SSGSDSDSDS  240
LFDIEGGLCE QSTNKLNVKR MRRMESNRES ARRSRKRKQA HLTGLETQVD QLQGENASLF  300
KQLTDANQQF TASVTDNRIL KSNVEALRAK VKLAEDMVAR GAVSCGLGHL GLSPALNPPD  360
VLSGLEFPGD DACFTSLSPT EQVLNSPLQS IASLESIDNR VASEVTSCGG GGAGVDVWGW  420
DSHPNGGLSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	277	RRSRKRK
2	271	278	RRSRKRKQ
3	273	278	SRKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:7919992}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021315644.1	1e-154	basic leucine zipper 9-like isoform X1
Swissprot	Q6ETX0	1e-119	RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBL	A0A194YMZ4	1e-153	A0A194YMZ4_SORBI; Uncharacterized protein
STRING	Sb04g005020.1	1e-154	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	3e-38	basic leucine zipper 9

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development. Plant Cell, 1994. 6(9): p. 1277-87 [PMID:7919992]