PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00036.1.g04050.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 510aa MW: 54531.1 Da PI: 8.2405 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.8e-06 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H Zjn_sc00036.1.g04050.1.am.mk 99 FVCEICGKGFQRDQNLQLHRRGH 121 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.49E-7 | 98 | 121 | No hit | No description |
SMART | SM00355 | 0.012 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 99 | 121 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.614 | 99 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 142 | 172 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.49E-7 | 172 | 197 | No hit | No description |
SMART | SM00355 | 160 | 177 | 197 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MVLALVVPLS LTFFPFTSPP IPADTQLLQE QGEAADQDSS MSNLTSSASG PNNPPPPPSP 60 APAASAGNNK RKRSLPGNPD PDAEVVALSP ATLMATNRFV CEICGKGFQR DQNLQLHRRG 120 HNLPWKLKQR GTGKEAARKK VYVCPEASCV HHDPARALGD LTGIKKHFFR KHGEKKWKCD 180 KCSKKYAVHS DWKAHSKICG TREYKCDCGT IFSRRDSFIT HRAFCDALTE ESARAIGLNA 240 AMHGAAPVHQ ALLFSSTSHS QQVMQQQQHQ ELAAFQDQQP QQEVMQPQPP PPPPQQVQAA 300 SQQQQHCNYA MKTEMPSPWP TMPYDHHAHP LLQPLCAQSS ATSAPPPPQQ QQVPRASAHL 360 SATALLQKAA QMGATISTAG GGGAHYIQMA GAATSAPGSA SFGLGLTGLN AQQDAAMGGL 420 ARSTFHGGSG EDGGGGGGAN EGMTRDFLGL RAFSHRDILN LAGLDSCIGA VNANTSMGCY 480 EPQQHAQAQA QQQQQQQSNN EQWHGMGSHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-35 | 173 | 239 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 8e-35 | 173 | 239 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00355 | DAP | Transfer from AT3G13810 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956926 | 0.0 | EU956926.1 Zea mays clone 1577561 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969529.1 | 0.0 | protein indeterminate-domain 7 | ||||
Swissprot | Q9LRW7 | 1e-115 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
TrEMBL | K3XHB6 | 0.0 | K3XHB6_SETIT; Uncharacterized protein | ||||
STRING | Si001287m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 1e-94 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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