PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G13810.2
Common NameAtIDD11, IDD11
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 514aa    MW: 56941.1 Da    PI: 8.0359
Description indeterminate(ID)-domain 11
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G13810.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-05100122123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  AT3G13810.2 100 FVCEICNKGFQRDQNLQLHRRGH 122
                  89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-599122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.49E-699122No hitNo description
SMARTSM003550.017100122IPR015880Zinc finger, C2H2-like
PfamPF121718.2E-5100122IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.949100122IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SMARTSM00355240142172IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.49E-6172197No hitNo description
SMARTSM00355180177197IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MLLHQHQQPQ QDENMSNLTS ASGDQASVSS GNITEASGSN YFPHHQQQQE QQQQQIQKLS  60
CSWTDSLFQL FDTVTFLEIL YPESEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR  120
GHNLPWKLKQ RSNKEVIRKK VYVCPEASCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCD  180
KCSKKYAVQS DCKAHSKTCG TKEYRCDCGT LFSRRDSFIT HRAFCEALAE ETAREVVIPQ  240
NQNNNQPNPL LIHQSASHPH HHHQTQPTIN VSSSSSSSHN HNIINSLHFD TNNGNTNNSN  300
NSNNHLHTFP MKKEQQSNDH IMNYHHSIIP PWLAPQPHAL TSSNPNPSNG GGGGGSLFSL  360
ASPAMSATAL LQKAAQMGST KTPPLPPTTA YERSTHNNNL TTTMAAMMTS PSGFISSNNN  420
NHVLFQDYNA SGFDNHGREE AFDDTFGGFL RTNEVTAAAG SEKSTKSGGG EGLTRDFLGL  480
RPLMSHNEIL SFAGLGSCIN SSASDQLHPK PWQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-32173241371Zinc finger protein JACKDAW
5b3h_F4e-32173241371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126139KLKQRSNKEVIRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.287090.0flower| leaf| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425641350.0
Genevisible257610_at0.0
Expression AtlasAT3G13810-
AtGenExpressAT3G13810-
ATTED-IIAT3G13810-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00355DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G13810.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G13810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001189882.10.0indeterminate(ID)-domain 11
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A1J3FCK10.0A0A1J3FCK1_NOCCA; Protein indeterminate-domain 11 (Fragment)
TrEMBLA0A1J3JPP20.0A0A1J3JPP2_NOCCA; Protein indeterminate-domain 11
STRINGAT3G13810.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Representative plantOGRP9516242
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Zik M,Irish VF
    Global identification of target genes regulated by APETALA3 and PISTILLATA floral homeotic gene action.
    Plant Cell, 2003. 15(1): p. 207-22
    [PMID:12509532]
  3. Gong W, et al.
    Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes.
    Plant Physiol., 2004. 135(2): p. 773-82
    [PMID:15208423]
  4. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  5. Colasanti J, et al.
    The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants.
    BMC Genomics, 2006. 7: p. 158
    [PMID:16784536]
  6. Morita MT, et al.
    A C2H2-type zinc finger protein, SGR5, is involved in early events of gravitropism in Arabidopsis inflorescence stems.
    Plant J., 2006. 47(4): p. 619-28
    [PMID:16813575]
  7. Thibaud-Nissen F, et al.
    Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants.
    Plant J., 2006. 47(1): p. 152-62
    [PMID:16824183]
  8. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]