PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00036.1.g01010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 233aa MW: 25385.8 Da PI: 8.8657 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.5e-18 | 83 | 136 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq + Lee F+ n++++ +++e LA kl+L rqV vWFqNrRa+ k Zjn_sc00036.1.g01010.1.am.mk 83 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTK 136 67789***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121 | 6.3e-39 | 83 | 170 | 2 | 89 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++ Zjn_sc00036.1.g01010.1.am.mk 83 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQR 163 9******************************************************************************** PP HD-ZIP_I/II 83 eveeLre 89 eveeLr+ Zjn_sc00036.1.g01010.1.am.mk 164 EVEELRA 170 *****94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-18 | 62 | 136 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.01E-19 | 73 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.908 | 78 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.7E-16 | 80 | 142 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.17E-15 | 81 | 139 | No hit | No description |
Pfam | PF00046 | 9.4E-16 | 83 | 136 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 113 | 136 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 3.3E-10 | 138 | 171 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 7.1E-23 | 138 | 181 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGATSPSASG LELTMAVPGL SSSSGSEGLA GCNNGNGNGN TNVRVDLDMN QPASGGEEEE 60 FPMGSVEEDE EERACGGGPH RPKKLRLSKE QSRLLEESFR LNHTLTPKQK EALAVKLKLR 120 PRQVEVWFQN RRARTKLKQT EMECEYLKRC FGSLTEENRR LQREVEELRA MRVAPPTVLS 180 PHTRQPLPAS ALTMCPRCER ITAATGPAAA RTGALAPPAA ASPFHPRRPS AAF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 138 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062688 | 0.0 | BT062688.2 Zea mays full-length cDNA clone ZM_BFb0333H18 mRNA, complete cds. | |||
GenBank | EU966190 | 0.0 | EU966190.1 Zea mays clone 292384 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819203.1 | 1e-127 | homeobox-leucine zipper protein HOX3-like | ||||
Swissprot | Q0JKX1 | 1e-125 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 1e-125 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A2T7DJ80 | 1e-131 | A0A2T7DJ80_9POAL; Uncharacterized protein | ||||
STRING | ORUFI01G27220.1 | 1e-123 | (Oryza rufipogon) | ||||
STRING | OS01T0643600-00 | 1e-123 | (Oryza sativa) | ||||
STRING | ONIVA01G27550.1 | 1e-123 | (Oryza nivara) | ||||
STRING | Si002823m | 1e-123 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6826 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 6e-60 | homeobox-leucine zipper protein 17 |