PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00036.1.g00820.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 568aa MW: 61593.6 Da PI: 7.2282

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00036.1.g00820.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	395.4	5.9e-121	10	342	31	374
GRAS 31 aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeer 111 a ++++ + R+a +ft AL++rl+ + p+s+ + ++++ ++ f+e++P+lkf+h+taNqaIleav+g + Zjn_sc00036.1.g00820.1.am.mk 10 AVSAASGIGRVAVHFTAALSRRLFP--P------PTSPPPAPPAADHALLYHHFYEACPYLKFAHFTANQAILEAVQGRAE 82 556678999*************9..3......33333333379999***************************** PP GRAS 112 vHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 vH+iDf+++qGlQWpaL+qaLa Rp+gpp lRiTg+g+p++ ++ l+ +g rLa++A++++vpf f+ ++a+rl++++++ Zjn_sc00036.1.g00820.1.am.mk 83 VHVIDFSLMQGLQWPALIQALALRPGGPPFLRITGIGPPSPPGRDDLRDVGLRLADLARSVRVPFAFRGVAANRLDEVRPW 163 ***************************************************************************** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +L+v+pgEa+aVn+vlqlhrll ++ + + ++d+vL++v s++Pkv++vveqeadhn++ Fl+rf+eal yysa+fdsl+a Zjn_sc00036.1.g00820.1.am.mk 164 MLQVSPGEAVAVNSVLQLHRLLGDPSADRAPIDAVLDCVSSVRPKVFTVVEQEADHNKPGFLDRFTEALFYYSAVFDSLDA 244 ***************************************************************************99 PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 + +v +++l+rei+++v++ega r+erhe l++Wrerl++aG+ +vpl+ +a qa++l+ ++++g+ vee Zjn_sc00036.1.g00820.1.am.mk 245 A---SGGAGDTVAEAYLEREICDIVCAEGAVRKERHEPLQRWRERLGRAGLAAVPLGANALRQARMLVGLFSGEGHCVEEA 322 9...358888999999************************************************************* PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 +g+l+lgW++rpL+s+SaWr Zjn_sc00036.1.g00820.1.am.mk 323 EGCLTLGWHGRPLFSASAWR 342 *****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.806	1	322	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-118	10	342	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
LADAHATLAA VSAASGIGRV AVHFTAALSR RLFPPPTSPP PAPPAADHAL LYHHFYEACP 60 YLKFAHFTAN QAILEAVQGR AEVHVIDFSL MQGLQWPALI QALALRPGGP PFLRITGIGP 120 PSPPGRDDLR DVGLRLADLA RSVRVPFAFR GVAANRLDEV RPWMLQVSPG EAVAVNSVLQ 180 LHRLLGDPSA DRAPIDAVLD CVSSVRPKVF TVVEQEADHN KPGFLDRFTE ALFYYSAVFD 240 SLDAASGGAG DTVAEAYLER EICDIVCAEG AVRKERHEPL QRWRERLGRA GLAAVPLGAN 300 ALRQARMLVG LFSGEGHCVE EAEGCLTLGW HGRPLFSASA WRAEENNPSD SNVDGSNGSE 360 ESNISCSLRC AAVAWFRGKS SRMHASAYSS GFGRRAGTVM RAAARRVSSK PKGCEGTLLG 420 TLQQRKAGYV SETQVRAPRS HLRSPRACER QRGEEERFGH RSTMQLIEEE KQLDSSAVFP 480 MEGKEMVGFA SKLAAETATL REVYVLGDVE GVRRRAEQPP LREPNGVEPV PPFPAVREGS 540 SGHAFSREDV ASVLQSRKTE RPVSDDDI

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

LADAHATLAA VSAASGIGRV AVHFTAALSR RLFPPPTSPP PAPPAADHAL LYHHFYEACP  60
YLKFAHFTAN QAILEAVQGR AEVHVIDFSL MQGLQWPALI QALALRPGGP PFLRITGIGP  120
PSPPGRDDLR DVGLRLADLA RSVRVPFAFR GVAANRLDEV RPWMLQVSPG EAVAVNSVLQ  180
LHRLLGDPSA DRAPIDAVLD CVSSVRPKVF TVVEQEADHN KPGFLDRFTE ALFYYSAVFD  240
SLDAASGGAG DTVAEAYLER EICDIVCAEG AVRKERHEPL QRWRERLGRA GLAAVPLGAN  300
ALRQARMLVG LFSGEGHCVE EAEGCLTLGW HGRPLFSASA WRAEENNPSD SNVDGSNGSE  360
ESNISCSLRC AAVAWFRGKS SRMHASAYSS GFGRRAGTVM RAAARRVSSK PKGCEGTLLG  420
TLQQRKAGYV SETQVRAPRS HLRSPRACER QRGEEERFGH RSTMQLIEEE KQLDSSAVFP  480
MEGKEMVGFA SKLAAETATL REVYVLGDVE GVRRRAEQPP LREPNGVEPV PPFPAVREGS  540
SGHAFSREDV ASVLQSRKTE RPVSDDDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-56	19	341	58	378	Protein SCARECROW
5b3h_A	2e-56	19	341	57	377	Protein SCARECROW
5b3h_D	2e-56	19	341	57	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Transcription coactivator of the zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling (PubMed:25035403). No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269\|PubMed:11487693, ECO:0000269\|PubMed:11606551, ECO:0000269\|PubMed:11606552, ECO:0000269\|PubMed:14973286, ECO:0000269\|PubMed:15128937, ECO:0000269\|PubMed:16034591, ECO:0000269\|PubMed:17933900, ECO:0000269\|PubMed:25035403, ECO:0000269\|PubMed:9389651}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969307.1	0.0	DELLA protein DWARF8
Swissprot	Q9LQT8	1e-127	GAI_ARATH; DELLA protein GAI
TrEMBL	K3XHC2	0.0	K3XHC2_SETIT; Uncharacterized protein
STRING	Si001293m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-125	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gallego-Giraldo C, et al. Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis. Plant J., 2014. 79(6): p. 1020-1032 [PMID:24961590] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] Shi H,Wei Y,Wang Q,Reiter RJ,He C Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J. Pineal Res., 2016. 60(3): p. 373-9 [PMID:26887824] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Qu J,Kang SG,Hah C,Jang JC Molecular and cellular characterization of GA-Stimulated Transcripts GASA4 and GASA6 in Arabidopsis thaliana. Plant Sci., 2016. 246: p. 1-10 [PMID:26993231] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Wang H, et al. The DELLA-CONSTANS Transcription Factor Cascade Integrates Gibberellic Acid and Photoperiod Signaling to Regulate Flowering. Plant Physiol., 2016. 172(1): p. 479-88 [PMID:27406167] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Liu B,De Storme N,Geelen D Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis. Plant Physiol., 2017. 173(1): p. 338-353 [PMID:27621423] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917] Zentella R, et al. The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nat. Chem. Biol., 2017. 13(5): p. 479-485 [PMID:28244988] Zhang Y, et al. GA-DELLA pathway is involved in regulation of nitrogen deficiency-induced anthocyanin accumulation. Plant Cell Rep., 2017. 36(4): p. 557-569 [PMID:28275852] Zhang L,Chen L,Yu D Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering. Plant Physiol., 2018. 176(1): p. 790-803 [PMID:29133369] Nelson SK,Ariizumi T,Steber CM Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. Front Plant Sci, 2017. 8: p. 2158 [PMID:29312402] Liu B,De Storme N,Geelen D Cold-Induced Male Meiotic Restitution in Arabidopsis thaliana Is Not Mediated by GA-DELLA Signaling. Front Plant Sci, 2018. 9: p. 91 [PMID:29459879] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856] Wright DA, et al. Recovery of YAC-end sequences through complementation of an Escherichia coli pyrF mutation. Nucleic Acids Res., 1997. 25(13): p. 2679-80 [PMID:9185581]