PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00036.1.g00270.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 313aa MW: 32622.6 Da PI: 4.3136 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.4e-18 | 97 | 147 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrd + r r++lg+f+taeeAa ++ a+ +l+g Zjn_sc00036.1.g00270.1.am.mk 97 TKFRGVRRRP-WGKYAAEIRDpW-----RgVRVWLGTFDTAEEAAWVYDSAAIQLRG 147 69********.**********88.....55*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.1E-11 | 97 | 147 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.01E-27 | 97 | 154 | No hit | No description |
SMART | SM00380 | 6.3E-32 | 98 | 161 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.51 | 98 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-21 | 98 | 155 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-28 | 98 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 99 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 121 | 137 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MSRSRTVRIF WDDPDVTDSS GEEDAYGARK VGRLVRELPP VEAAAAAAAA AAGMLEQSSA 60 GDGERGRRPA AGGLGGCSGG ARRRLGSKGA GSVAPGTKFR GVRRRPWGKY AAEIRDPWRG 120 VRVWLGTFDT AEEAAWVYDS AAIQLRGPNA TTNFSSAAAA DSGGSGGGHQ DQVPAGYESG 180 TESLPAVSSP TSVLRKVPSL SSLAEDKDES DAATGEPAAE CSLAALEELG EFVPFEDAPV 240 YASSSGFWDF EPDAAGFLYA EPSSPETAWD VAAATTSASS GDASWPAPSV HQENDYFQDL 300 RDLFPLNPLP AIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 89 | 163 | 5 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644464.1 | 1e-130 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | J3L2I6 | 1e-128 | J3L2I6_ORYBR; Uncharacterized protein | ||||
STRING | OB01G34420.1 | 1e-129 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 3e-24 | cytokinin response factor 1 |