PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00035.1.g02240.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 381aa    MW: 43174 Da    PI: 7.8726
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00035.1.g02240.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.6e-07427226
                                    -S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                    k++lC+f++  G C  G+ C F+H+
  Zjn_sc00035.1.g02240.1.sm.mkhc  4 KRVLCKFYMH-GACLKGEYCEFSHD 27
                                    99****8888.*************5 PP
2zf-CCCH28.42.9e-093555526
                                    --SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                                     C f+++ G C+yG+rC++ H+
  Zjn_sc00035.1.g02240.1.sm.mkhc 35 VCTFYQK-GACSYGSRCRYDHV 55
                                    5******.*************7 PP
3zf-CCCH231.4e-07152173426
                                     ---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                     ++C+ fa+ G C+yG++C  +Hg
  Zjn_sc00035.1.g02240.1.sm.mkhc 152 PICS-FAAAGNCPYGENCLQMHG 173
                                     6788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.704229IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4430IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-7427IPR000571Zinc finger, CCCH-type
PfamPF156631.1E-7663No hitNo description
PROSITE profilePS5010314.5583057IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-43156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-53154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-43554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.267148175IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014149174IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4152173IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.8E-13206281No hitNo description
Gene3DG3DSA:3.30.40.102.7E-10210276IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001623.64E-4216276No hitNo description
PROSITE profilePS5008912.46217275IPR001841Zinc finger, RING-type
SMARTSM001842.1E-7217274IPR001841Zinc finger, RING-type
PfamPF000973.3E-8217274IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180241250IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.011304332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676304333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MLSKRVLCKF YMHGACLKGE YCEFSHDWND QPNNVCTFYQ KGACSYGSRC RYDHVKVSRN  60
PRVLPPQPSS STTRPVASTL QVLSSSHPLH MGHQKNSSNE TQQTSMNMLE HSGIKSPWRS  120
DFQLATVSED DIDWSANSTS QNQAPMRPAD LPICSFAAAG NCPYGENCLQ MHGDLCTTCG  180
KMCLHPYRPD ERAEHIKLCE KNHKRLEALK RSQEIECSVC LDRVLSKPTA AERKFGLLSE  240
CDHAFCIACI RNWRNNSPAS GMDVNSALRA CPICRKLSYY VIPSVLWYFS KEEKQEIIES  300
YKSKLKSIDC KYFDFGTGSC PFGTSCFYRH AYRDGRLEEV VLRHLDADDG STVIAKNIRN  360
FGVHWSPARH LDDPIQEVSV I
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965338.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLK3XXQ20.0K3XXQ2_SETIT; Uncharacterized protein
STRINGSi006712m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-146C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]