PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00034.1.g06110.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 255aa MW: 27883.1 Da PI: 5.4139 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 136.5 | 1.7e-42 | 5 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkr 73 lppG+rF Pt+eel+++yL++k++g ++++e+vi+ +++y+v+P +L + +++ + w+fF++r++++a+g r Zjn_sc00034.1.g06110.1.sm.mkhc 5 LPPGYRFYPTEEELICFYLRNKLDGLRNDIERVIPVFEVYSVDPGQLTEiharlwGGAGQGEPWFFFCPRQEREARGGR 83 79****************************99***************8445555422337789**************** PP NAM 74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++r+t +gyWka g+ +v++++++++g+kkt+vfy+grap+g++t+W m+eyr+ Zjn_sc00034.1.g06110.1.sm.mkhc 84 PSRTTPTGYWKAAGTPGAVYAADRRAIGMKKTMVFYRGRAPSGTRTEWKMNEYRA 138 *****************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-46 | 3 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.469 | 5 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-24 | 6 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MASGLPPGYR FYPTEEELIC FYLRNKLDGL RNDIERVIPV FEVYSVDPGQ LTEIHARLWG 60 GAGQGEPWFF FCPRQEREAR GGRPSRTTPT GYWKAAGTPG AVYAADRRAI GMKKTMVFYR 120 GRAPSGTRTE WKMNEYRALQ YDAFGTMDGS SSSAHAAAAP QNLPPQLRSE FSLCRLYTQS 180 GALRQFDRRP LAGATTGPGD GPVPSIVAAA STDVNDGAGP SGGSTQQVQL MERAGNDPYG 240 EDLGDLEDLI YWPGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-27 | 5 | 140 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-27 | 5 | 140 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-27 | 5 | 140 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-27 | 5 | 140 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-27 | 5 | 140 | 20 | 147 | NAC domain-containing protein 19 |
3swm_B | 2e-27 | 5 | 140 | 20 | 147 | NAC domain-containing protein 19 |
3swm_C | 2e-27 | 5 | 140 | 20 | 147 | NAC domain-containing protein 19 |
3swm_D | 2e-27 | 5 | 140 | 20 | 147 | NAC domain-containing protein 19 |
3swp_A | 2e-27 | 5 | 140 | 20 | 147 | NAC domain-containing protein 19 |
3swp_B | 2e-27 | 5 | 140 | 20 | 147 | NAC domain-containing protein 19 |
3swp_C | 2e-27 | 5 | 140 | 20 | 147 | NAC domain-containing protein 19 |
3swp_D | 2e-27 | 5 | 140 | 20 | 147 | NAC domain-containing protein 19 |
4dul_A | 2e-27 | 5 | 140 | 17 | 144 | NAC domain-containing protein 19 |
4dul_B | 2e-27 | 5 | 140 | 17 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071274 | 1e-122 | AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818071.1 | 1e-120 | NAC domain-containing protein 90-like | ||||
TrEMBL | A0A1E5URX2 | 1e-125 | A0A1E5URX2_9POAL; NAC domain-containing protein 90 | ||||
STRING | Si002586m | 1e-119 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-64 | NAC domain containing protein 90 |